Table 3 Equally abundant organisms (Coefficient of Variation, CV% < 10) in the analysed honey samples (HB9, HB12 and HB13).

From: Shotgun sequencing of honey DNA can describe honey bee derived environmental signatures and the honey bee hologenome complexity

Class

Ranka

Organism

No. of annotated reads

Read counts

clr-transformed read counts

HB9

HB12

HB13

HB9

HB12

HB13

CV%b

Bacteria

species

Melissococcus plutonius

105,867

100,269

159,306

2.3

2.5

2.3

4.7

Bacteria

NA

Bifidobacterium asteroides DSM 20089

6

3

12

−2.0

−2.1

−1.9

5.4

Bacteria

species

Frischella perrara

161,403

128,103

169,719

2.5

2.6

2.3

5.6

Bacteria

species

Lactobacillus kunkeei

13,121,714

15,232,526

11,376,580

4.4

4.6

4.1

5.9

Bacteria

species

Gilliamella apicola

370,547

174,546

260,828

2.8

2.7

2.5

6.3

Bacteria

species

Acinetobacter sp. SWBY1

44

24

87

−1.1

−1.2

−1.0

7.9

Bacteria

species

Parasaccharibacter apium

14,090

10,745

16033

1.4

1.5

1.3

7.9

Bacteria

species

Erwinia gerundensis

32

12

34

−1.2

−1.5

−1.4

8.0

Bacteria

NA

Lactobacillus kunkeei EFB6

927,869

1,160,989

755,840

3.2

3.5

2.9

9.0

Bacteria

genus

Lactobacillus

565,536

674,736

447,486

3.0

3.3

2.7

9.5

  1. aLevel in the taxonomic hierarchy. NA indicates that the rank was not defined.
  2. bSigned coefficient of variation based on the centered log-ratio (clr) transformed read counts.
  3. Data are sorted by CV%.