Table 1 Samples investigated by multiple approaches.

From: Klenkia terrae resistant to DNA extraction in germ-free mice stools illustrates the extraction pitfall faced by metagenomics

Samples and their names

Number of sample

Method used

26.2.

1

Scanning Electron microscopy (SEM) qPCR*

Iax_3, 26.1

2

Metagenomic qPCR*

17.9, 26.3

2

Embedding (TEM) Culture

Iax_1, Iax_2, Iax_4, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 17.1, 17.2, 17.4, 26.4, 26.5

28

qPCR*

10 kibbles

10

Culture

  1. In the table “*” was employed for qPCR designed after the genome sequencing and targeting the bacterium isolate.
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