Table 3 Number of DEGs associated with saffron flowering transition.
From: Transcriptome profiling of the flowering transition in saffron (Crocus sativus L.)
Components | All profiles | Profile 0 | Profile 6 | Profile 7 |
|---|---|---|---|---|
Sugar metabolism | ||||
AMY | 3 | 0 | 1 | 2 |
BAM | 4 | 0 | 1 | 3 |
UGT | 4 | 1 | 1 | 2 |
SUS | 10 | 1 | 4 | 5 |
Plant hormone signal transduction | ||||
Auxin | Â | Â | Â | Â |
AUX1 | 7 | 0 | 2 | 5 |
ARF | 7 | 1 | 3 | 3 |
SAUR | 9 | 0 | 6 | 3 |
AUX/IAA | 12 | 1 | 6 | 5 |
Cytokinine | ||||
CRE1 | 4 | 1 | 2 | 1 |
A-ARR | 5 | 2 | 2 | 1 |
B-ARR | 14 | 0 | 9 | 5 |
Gibberellin | ||||
GID1 | 2 | 0 | 0 | 2 |
GAMYB | 1 | 0 | 0 | 1 |
TF | 3 | 0 | 1 | 2 |
Abscisic acid | ||||
NCED | 5 | 5 | 0 | 0 |
PYR/PYL | 3 | 0 | 0 | 3 |
PP2C | 3 | 2 | 0 | 1 |
ABF | 2 | 1 | 1 | 0 |
CYP707A | 2 | 0 | 1 | 1 |
Cell cycle regulatory | ||||
CYCA/B/D | 21 | 0 | 8 | 13 |
CDKB | 5 | 0 | 3 | 2 |
KNOTTED | 4 | 0 | 2 | 2 |
Circadian clock pathway | ||||
PIF3 | 3 | 0 | 1 | 2 |
CHS | 3 | 0 | 1 | 2 |
FT | 1 | 0 | 1 | 0 |
Flowering activators | ||||
FD | 4 | 1 | 1 | 2 |
FLD | 1 | 0 | 0 | 1 |
SOC1 | 1 | 0 | 0 | 1 |
AP1 | 5 | 0 | 0 | 5 |
AP2 | 5 | 0 | 2 | 3 |
AP3 | 2 | 0 | 0 | 2 |
PI | 4 | 0 | 2 | 2 |
MADS-box | 6 | 2 | 1 | 3 |
