Table 3 Population statistics for all 590,086 confidently-called variant and invariant sites, and a subset of 1,032 hard-filtered SNP loci, for 28 P. xylostella populations collected from Australia in 2015.

From: Genome-wide analysis of diamondback moth, Plutella xylostella L., from Brassica crops and wild host plants reveals no genetic structure in Australia

Population	All variant and invariant sites									1,032 SNP variants
Population	N	Sites	Site depth	SNPs	Indels	Private sites	\(H_{\text {O}}\)	\(H_{\text {S}}\)	\(F_{\text{IS}}\)	N	Site depth	\(H_{\text {O}}\)	\(H_{\text {S}}\)	\(F_{\text{IS}}\)
Goulburn NSW	13.3	559,574	33	8,318	1,574	15	0.0090	0.0096	0.0545	12.9	34	0.1948	0.1985	0.0153
Richmond NSW	15.2	560,841	37	8,349	1,595	14	0.0089	0.0096	0.0634	14.9	38	0.1983	0.1994	0.0005
Werombi NSW	8.5	556,788	42	8,473	1,605	13	0.0088	0.0094	0.0438	8.3	42	0.2033	0.2008	− 0.0127
Bundaberg QLD	14.5	536,071	25	7,777	1,472	16	0.0095	0.0097	0.0371	13.3	26	0.2131	0.2065	− 0.0247
Gatton QLD	12.7	533,431	27	7,674	1,438	18	0.0095	0.0098	0.0365	11.4	28	0.2129	0.2116	− 0.0019
Warwick QLD	13.2	555,382	33	8,328	1,590	20	0.0092	0.0097	0.0461	12.3	33	0.2012	0.2020	− 0.0015
Colebatch SA	11.5	565,070	31	8,449	1,612	17	0.0091	0.0096	0.0445	11.0	32	0.2023	0.2036	0.0019
Littlehampton SA	8.4	551,419	38	8,463	1,616	19	0.0091	0.0097	0.0495	8.2	38	0.2039	0.2068	0.0005
Mallala SA	13.9	545,678	28	8,012	1,526	20	0.0093	0.0096	0.0350	13.1	29	0.2090	0.2060	− 0.0133
Millicent SA	8.1	532,566	32	8,054	1,539	15	0.0089	0.0096	0.0607	7.8	32	0.2020	0.2033	0.0010
Minnipa SA	15.3	563,734	34	8,433	1,608	17	0.0091	0.0095	0.0506	14.6	34	0.2063	0.2061	− 0.0004
Mt Hope SA	14.9	551,211	30	8,117	1,542	18	0.0093	0.0097	0.0417	13.4	31	0.2164	0.2101	− 0.0211
Padthaway SA	12.6	529,583	30	7,804	1,488	16	0.0091	0.0096	0.0513	12.0	30	0.2042	0.2061	0.0005
Southend SA	15.3	563,465	34	8,365	1,597	6	0.0093	0.0091	− 0.0131	14.4	34	0.2099	0.1953	− 0.0598
Tintinara SA	14.6	539,118	25	7,853	1,499	14	0.0096	0.0097	0.0278	13.4	26	0.2093	0.2026	− 0.0202
Virginia SA	15.4	567,767	35	8,548	1,648	15	0.0092	0.0096	0.0485	14.9	35	0.2053	0.2058	− 0.0023
Walkers Beach SA	15.3	564,509	36	8,455	1,627	15	0.0091	0.0094	0.0407	14.8	36	0.1968	0.1958	− 0.0067
Walkers Beach SA	11.3	557,146	26	8,246	1,564	15	0.0095	0.0098	0.0276	10.4	27	0.2099	0.2064	− 0.0137
Wokurna SA	15.1	558,036	33	8,246	1,579	19	0.0094	0.0097	0.0379	14.0	34	0.2120	0.2105	− 0.0098
Deddington TAS	15.3	565,674	40	8,492	1,630	16	0.0091	0.0096	0.0544	15.0	40	0.2022	0.2044	0.0054
Cowangie VIC	14.4	565,260	35	8,457	1,612	19	0.0092	0.0096	0.0445	13.7	35	0.2100	0.2083	− 0.0051
Werribee VIC	11.9	538,661	25	7,878	1,469	16	0.0093	0.0097	0.0416	11.0	27	0.2091	0.2050	− 0.0176
Dalyup WA	15.3	562,709	32	8,452	1,624	17	0.0092	0.0097	0.0459	14.4	32	0.2027	0.2048	0.0017
Esperance WA	13.5	532,826	27	7,718	1,460	20	0.0096	0.0098	0.0239	12.2	28	0.2109	0.2043	− 0.0262
Kalannie WA	15.3	564,388	33	8,410	1,614	17	0.0091	0.0096	0.0496	14.6	34	0.2046	0.2065	0.0009
Manjimup WA	12.3	556,387	36	8,274	1,567	18	0.0091	0.0096	0.0517	12.0	37	0.2007	0.2032	0.0095
Narrogin WA	11.9	541,517	29	7,947	1,512	16	0.0094	0.0097	0.0376	11.1	30	0.2115	0.2104	− 0.0048
Narrogin WA	15.1	557,879	34	8,284	1,582	18	0.0090	0.0096	0.0579	14.7	35	0.1969	0.2011	0.0125

N, number of individuals genotyped per locus; \(H_{\text {O}}\), observed heterozygosity; \(H_{\text {S}}\), gene diversity; \(F_{\text{IS}}\), Nei’s inbreeding coefficient.

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Table 3 Population statistics for all 590,086 confidently-called variant and invariant sites, and a subset of 1,032 hard-filtered SNP loci, for 28 P. xylostella populations collected from Australia in 2015.

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