Table 2 General information and genomic features of S. pyogenes NCTC 8198T = CCUG 4207T.
Section | Features | ||
|---|---|---|---|
General information | Organism | Streptococcus pyogenes | |
Taxonomy ID | 1,314 | ||
Strain | S.F. 130T = NCTC 8198T = CCUG 4207T | ||
Collection date | ca., 1926 | ||
Host | Homo sapiens | ||
Host disease | Scarlett fever | ||
Geographic location | United Kingdom, Manchester | ||
Assemblies | Strain | S. pyogenes NCTC 8198T | S. pyogenes CCUG 4207T |
Sequencing platforms | PacBio RSII | Illumina HiSeq 2500 + Oxford Nanopore MinION | |
Assembly method | HGAP version 3 | SPAdes version 3.11.0 | |
Assembly coverage | 581 X | 186 X (Illumina) + 576 X (Oxford Nanopore) | |
GenBank accession number | LN831034 | CP028841 | |
Assembly accession number | GCA_002055535.1 | GCA_004028355.1 | |
BioProject ID | NCTC_3000 (PRJEB6403) | TAILORED-Treatment (PRJNA302716) | |
Finishing quality | Closed complete genome | Closed complete genome | |
Number of contigs | 1 | 1 | |
Number of N's | 0 | 0 | |
Total length (bp) | 1,914,862 | 1,914,862 | |
GC content (%) | 38.5 | 38.5 | |
RefSeq annotation | Annotation method | PGAP version 4.1 | PGAP version 4.7 |
Number of genes (total) | 2,007 | 2,009 | |
Total coding sequences (CDSs) | 1,918 | 1,920 | |
Protein coding sequences | 1,866 | 1,860 | |
Pseudogenes | 52 | 60 | |
Number of RNA genes | 89 | 89 | |
tRNA | 67 | 67 | |
Non-coding RNA | 4 | 4 | |
Ribosomal RNA | 18 (6 operons) | 18 (6 operons) | |
Hypothetical proteins | 334 | 306 | |
