Table 1 Predicted in silico antimicrobial peptides of Red King Crab.
Crab gene ID | Crab contigs | AMP* | Peptide length, aa | Comments | Annotation | |
|---|---|---|---|---|---|---|
PcBuf1 | TRINITY_DN14568_c0_g1_i1 | AP00308_Buforin | 136 | Buforin-like (histone H2A)/AP00489_Hipposin | ||
PcBuf2 | TRINITY_DN13_c0_g1_i8 | AP00308_Buforin | 124 | Buforin-like (histone H2A)/AP00489_Hipposin | ||
PcBuf3 | TRINITY_DN118338_c0_g1_i1 | AP02813_Acipensin | 65 | of 124 | 3′ fragment | histone H2A-like [Osmia bicornis bicornis] |
PcAcp1 | TRINITY_DN78095_c0_g1_i1 | AP02811_Acipensin | 97 | fragment | Acipensin 1 (Ac1, bony fish, animals, XXE; UCLL1) | |
PcAcp2 | TRINITY_DN80224_c0_g1_i1 | AP02811_Acipensin | 92 | fragment | Acipensin 1 (Ac1, bony fish, animals, XXE; UCLL1) | |
PcAcp3 | TRINITY_DN70256_c0_g1_i1 | AP02813_Acipensin | 126 | of 138 | 5′ fragment | histone H2A [Tetrahymena thermophila SB210] |
PcAcp4 | TRINITY_DN106707_c0_g1_i1 | AP02813_Acipensin | 264 | of 401 | 5′ fragment | core histone macro-H2A.1-like [Penaeus vannamei] |
PcUbi1 | TRINITY_DN95458_c0_g1_i1 | AP02096_Ubiquicidin | 131 | Ubiquicidin (UBI 1–59, the ribosomal protein S30, human, primates, mammals, animals) | ||
PcUbi2 | TRINITY_DN26532_c3_g1_i1-RC | AP02096_Ubiquicidin | 133 | Ubiquicidin (UBI 1–59, the ribosomal protein S30, human, primates, mammals, animals) | ||
PcLys1 | TRINITY_DN4719_c0_g1_i3 | AP02766_S. scrofa lysozyme | 155 | SigP | S. scrofa lysozyme (SSL; pigs, mammals; animals; UCSS1a; Derivatives: LP and SP) | |
PcßThm | TRINITY_DN201_c0_g1_i2 | AP02533_cgTbeta | 90 | beta- thymosin 3 [Penaeus japonicus] | ||
PcCrs1 | TRINITY_DN1067_c1_g1_i1 | AP02625_CqCrs | 71 | 3′ fragment | CqCrs (CqCrustin, crustaceans, arthropods, invertebrates, animals; UCSS1a)/crustin antimicrobial peptide [Portunus trituberculatus] | |
PcCrs2 | TRINITY_DN17819_c0_g2_i4 | AP02625_CqCrs | 132 | SigP | CqCrs (CqCrustin, crustaceans, arthropods, invertebrates, animals; UCSS1a)/carcinin-like protein [Penaeus vannamei] | |
PcCrs3 | TRINITY_DN2629_c0_g1_i6 | AP02625_CqCrs | 96 | SigP | CqCrs (CqCrustin, crustaceans, arthropods, invertebrates, animals; UCSS1a)/crustin antimicrobial peptide [Portunus trituberculatus] | |
PcCrs4 | TRINITY_DN592_c0_g3_i1 | AP02625_CqCrs | 140 | 3′ fragment | CqCrs (CqCrustin, crustaceans, arthropods, invertebrates, animals; UCSS1a)/crustin antimicrobial peptide [Portunus trituberculatus] | |
PcCrs5 | TRINITY_DN592_c0_g4_i2 | AP01555_CrusEs | 105 | SigP | CrusEs (E. sinensis Crustin, crustaceans, arthropods, invertebrates, animals) | |
PcCrs6 | TRINITY_DN7452_c0_g1_i1 | AP02752_CrustinPm1 | 178 | SigP | CrusEs (crustin)/CrustinPm1 (UCSS1a; ?S = S; modular design; shrimp; crustaceans, arthropods, invertebrates, animals; BBL)/crustin 4 [Panulirus japonicus] | |
PcCrs7 | TRINITY_DN8115_c0_g1_i5 + TRINITY_DN2054_c0_g1_i2 | AP02625_CqCrs | 103 | SigP | CqCrs (CqCrustin, crustaceans, arthropods, invertebrates, animals; UCSS1a)/crustin antimicrobial peptide [Portunus trituberculatus] | |
PcCrs8 | TRINITY_DN788_c0_g2_i2 | AP02753_CrustinPm7 | 117 | SigP | CrustinPm7 (UCSS1a; ?S = S; modular design; shrimp, crustaceans, arthropods, invertebrates, animals; BBL) | |
PcPar1 | Newly assembled TRINITY_DN18_c0_g1_i2 + TRINITY_DN349_c20_g1_i2 | AP02959_Paralithocin 1 | 60 | SigP | Paralithocin 1 (the red king crab, crustaceans, arthropods, invertebrates, animals; 4S = S; UCSS1a) / MF919584 | |
PcPar2 | Newly assembled TRINITY_DN1423_c0_g1_i2 + TRINITY_DN26637_c1_g2_i2 | AP02960_Paralithocin 2 | 72 | SigP | Paralithocin 2 (the red king crab, crustaceans, arthropods, invertebrates, animals; 4S = S; UCSS1a) / MF919585 | |
PcPar2.2 | Newly assembled TRINITY_DN18_c0_g1_i4 + TRINITY_DN40550_c0_g1_i1 | AP02960_Paralithocin 2.2 | 73 | SigP | Paralithocin 2 (the red king crab, crustaceans, arthropods, invertebrates, animals; 4S = S; UCSS1a) / MF919585 | |
PcPar3 | TRINITY_DN5503_c0_g1_i1 | AP02961_Paralithocin 3 | 77 | SigP | Paralithocin 3 (the red king crab, crustaceans, arthropods, invertebrates, animals; 4S = S; UCSS1a) / MF919586 | |
PcPar4 | TRINITY_DN719_c0_g2_i4 | AP00208_Peptide 3,910 | 62 | Peptide 3,910/enhancer of rudimentary homolog isoform X2 [Penaeus vannamei] | ||
PcKaz1 | TRINITY_DN11095_c2_g1_i1 | AP03038_SPINK9-v1 | 65 | Proteinase inhibitor PSKP-1/AP03038—SPINK9-v1/Kazal-type serine proteinase inhibitor 1 [Apostichopus japonicus]/ Kazal 1&2 domains | ||
PcKaz2 | TRINITY_DN316_c0_g1_i3 | AP03038_SPINK9-v1 | 65 | SigP | SPINK9-v1/Kazal-type serine proteinase inhibitor 1 [Apostichopus japonicus]/5 Kazal 1 domains | |
PcALF1 | TRINITY_DN20295_c2_g1_i1 | AP02147_ALF | 132 | SigP | ALFpm3 (ALF-Pm3; anti-lipopolysaccharide factor) | |
PcALF2 | TRINITY_DN3350_c1_g6_i1 | AP02147_ALF | 135 | SigP | ALFpm3 (ALF-Pm3; anti-lipopolysaccharide factor) | |
PcALF3 | TRINITY_DN435_c4_g1_i3 | AP02147_ALF | 126 | SigP | ALFpm3 (ALF-Pm3; anti-lipopolysaccharide factor) | |
PcALF4 | TRINITY_DN77684_c0_g1_i1 | AP02147_ALF | 123 | SigP | ALFpm3 (ALF-Pm3; anti-lipopolysaccharide factor) | |
AMPs are part of the larger gene | ||||||
RINITY_DN2036_c0_g2_i5 | AP02012_YFGAP | 334 | YFGAP (Yellowfin Tuna GAPDH-related Antimicrobial Peptide; fish, animals)/glyceraldehyde 3-phosphate dehydrogenase [Acartia pacifica] | |||
TRINITY_DN142437_c0_g1_i1 | AP02388_BPTI | 105 | BPTI (Bovine Pancreatic Trypsin Inhibitor; UCSS1a; cattle, ruminants, mammals, animals; 3S = S) | |||
TRINITY_DN167115_c0_g1_i1 | AP02388_BPTI | 83 | BPTI (Bovine Pancreatic Trypsin Inhibitor; UCSS1a; cattle, ruminants, mammals, animals; 3S = S) | |||
TRINITY_DN20694_c0_g1_i5 | AP02388_BPTI | 821 | BPTI (Bovine Pancreatic Trypsin Inhibitor; UCSS1a; cattle, ruminants, mammals, animals; 3S = S) | |||
TRINITY_DN22010_c0_g1_i3 | AP02388_BPTI | 61 | BPTI (Bovine Pancreatic Trypsin Inhibitor; UCSS1a; cattle, ruminants, mammals, animals; 3S = S) | |||
TRINITY_DN25141_c0_g1_i6 | AP02388_BPTI | 764 | BPTI (Bovine Pancreatic Trypsin Inhibitor)/papilin-like [Hyalella azteca]—11 Kinutz-BPTI domains | |||
TRINITY_DN27023_c0_g1_i2 | AP02388_BPTI | 103 | BPTI (Bovine Pancreatic Trypsin Inhibitor; UCSS1a; cattle, ruminants, mammals, animals; 3S = S) | |||
TRINITY_DN627_c0_g1_i1 | AP02388_BPTI | 1,148 | BPTI (Bovine Pancreatic Trypsin Inhibitor; UCSS1a; cattle, ruminants, mammals, animals; 3S = S) | |||
TRINITY_DN953_c0_g1_i14 | AP02388_BPTI | 2,318 | BPTI (Bovine Pancreatic Trypsin Inhibitor; UCSS1a; cattle, ruminants, mammals, animals; 3S = S) | |||
TRINITY_DN2174_c0_g1_i1 | AP02453_Scolopendin | 303 | Scolopendin 1 (myriapods, arthropods, invertebrates, animals; XXA)/cyclin-dependent kinase 1-like [Penaeus vannamei] | |||
TRINITY_DN106471_c0_g1_i1 | AP02453_Scolopendin | 79 | fragment | Scolopendin 1 (myriapods, arthropods, invertebrates, animals; XXA) | ||
TRINITY_DN1514_c3_g5_i1 | AP02453_Scolopendin | 300 | Scolopendin 1 (myriapods, arthropods, invertebrates, animals; XXA)/cyclin-dependent kinase 1-like [Penaeus vannamei] | |||
TRINITY_DN160752_c0_g1_i1 | AP02453_Scolopendin | 68 | fragment | Scolopendin 1 (myriapods, arthropods, invertebrates, animals; XXA) | ||
TRINITY_DN2339_c0_g5_i1 | AP02453_Scolopendin | 297 | Scolopendin 1 (myriapods, arthropods, invertebrates, animals; XXA)/cyclin-dependent kinase 1-like [Penaeus vannamei] | |||
TRINITY_DN92735_c3_g1_i1 | AP02595_CcAMP1 | 295 | CcAMP1 (insects, arthropods, invertebrates, animals)/medium-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X3 [Strigops habroptila] | |||
TRINITY_DN2036_c0_g2_i3 | AP02680_SJGAP | 334 | 12 SapA and SapB domains | SJGAP (Skipjack Tuna GAPDH-related AMP, fish, animals, UCLL1a)/glyceraldehyde 3-phosphate dehydrogenase [Eriocheir sinensis] | ||
TRINITY_DN5804_c5_g1_i1 | AP02712_Lc-NK-lysin | 722 | fragment | Lc-NK-lysin (fish, animals, 4S = S, UCSS1)/prosaposin-like [Penaeus vannamei] | ||
TRINITY_DN90639_c0_g1_i1 | AP02797_cOT2 | 818 | fragment | cOT2 (UCSS1; Siamese crocodile, reptiles, animals)/Transferrin [Penaeus vannamei] | ||
TRINITY_DN11894_c0_g1_i1 | AP02797_cOT3 | 1,378 | cOT2 (UCSS1; Siamese crocodile, reptiles, animals)/Transferrin [Penaeus vannamei] | |||
