Table 2 SNPs and InDels observed in STR flanking regions.
Position* | Locus | Chromosome | STR locus | Upstream/downstream | Allele | Frequency |
|---|---|---|---|---|---|---|
68,011,922 | rs74640515 | 2 | D2S441 | Upstream | G>A | 0.0888 |
123,775,552 | rs73801920 | 5 | D5S818 | Upstream | C>A | 0.1636 |
91,740,273 | rs529713981 | 6 | D6S1043 | Downstream | G>A | 0.0047 |
84,160,204 | rs7789995 | 7 | D7S820 | Upstream | T>A | 0.9439 |
84,160,286 | rs16887642 | 7 | D7S820 | Downstream | G>A | 0.1869 |
84,160,205–84,160,212 | rs1463708262 | 7 | D7S820 | Upstream | Dup A (insertion) | 0.0047 |
5,983,970 | rs75219269 | 12 | vWA | Upstream | A>G | 0.1916 |
82,148,069 | rs9546005 | 13 | D13S317 | Downstream | A>T | 0.5514 |
82,148,073 | rs202043589 | 13 | D13S317 | Downstream | A>T | 0.0794 |
86,352,692 | rs563997442 | 16 | D16S539 | Upstream | C>G | 0.0140 |
86,352,761 | rs11642858 | 16 | D16S539 | Downstream | A>C | 0.3551 |
4,525,681 | rs561985213 | 20 | D20S482 | Upstream | G>A | 0.0093 |
4,525,680 | rs77560248 | 20 | D20S482 | Upstream | C>T | 0.1308 |
19,182,101 | rs1051967683 | 21 | D21S11 | Downstream | C>T | 0.0093 |
7,547,499 | rs371507752 | Y | DYS522 | Upstream | C>T | 0.0189 |
8,558,336 | rs370750300 | Y | DYS481 | Upstream | G>T | 0.0189 |
12,346,421 | NULL** | Y | DYS437 | Downstream | G>A | 0.1698 |
13,640,861 | rs555095027 | Y | DYS612 | Downstream | T>C | 0.0189 |
15,163,163 | rs758940870 | Y | DYS390 | Downstream | T>C | 0.0189 |
16,631,756 | NULL | Y | Y-GATA-H4 | Downstream | A>G | 0.4340 |
18,888,914 | NULL | Y | DYS460 | Upstream | A>T | 0.0189 |
18,888,949 | NULL | Y | DYS460 | Upstream | C>T | 0.0189 |
22,218,995–22,219,000 | NULL | Y | DYS448 | Repeat region (Not counted) | Del ATAGAG | 0.0189 |
9,402,257 | rs867174547 | X | DXS8378 | Upstream | A>G | 0.0062 |
65,435,703 | rs778986795 | X | DXS7132 | Downstream | C>T | 0.0435 |
67,757,322 | rs56195635 | X | DXS10074 | Upstream | C>G | 0.0062 |
134,284,967 | rs754666041 | X | DXS10103 | Repeat region (Not counted) | C>T | 0.0062 |
