Table 2 Sequence reads and the proportions of “Unassigned” generated per sample.
Sample | Experiment condition | Base called reads | Quality filtered reads | Goods coverage | The proportions of “Unassigned” (%) |
|---|---|---|---|---|---|
ZymoBIOMICS | MinION (T0) | 172,907 | 127,931 | 99.7 | 0.2 |
MinION (T1) | 122,858 | 95,121 | 99.8 | 0.3 | |
MinION (T2) | 403,620 | 338,055 | 99.6 | 0.3 | |
MinION (T3) | 124,534 | 103,881 | 99.7 | 0.3 | |
MinION (T4) | 188,203 | 153,855 | 99.6 | 0.3 | |
ATCC10 | MiSeq | 168,892 | – | 99.3 | 0.0 |
MinION (T0) | 52,999 | 39,317 | 99.5 | 1.0 | |
MinION (T4) | 29,652 | 23,404 | 99.8 | 0.0 | |
ATCC20 | MiSeq | 145,256 | – | 99.1 | 0.0 |
MinION (T0) | 41,745 | 12,838 | 99.5 | 9.7 | |
MinION (T4) | 22,199 | 12,370 | 99.8 | 0.0 | |
B2 | MiSeq | 312,725 | – | 99.1 | 21.8 |
MinION (T0) | 158,735 | 50,615 | 99.4 | 2.1 | |
MinION (T4) | 14,607 | 6,896 | 99.4 | 0.0 | |
B6 | MiSeq | 222,258 | – | 99.5 | 0.1 |
MinION (T0) | 110,380 | 24,681 | 99.1 | 12.0 | |
MinION (T4) | 12,176 | 6,003 | 99.1 | 0.0 | |
B7 | MiSeq | 219,844 | – | 97.0 | 0.1 |
MinION (T0) | 194,442 | 35,342 | 96.5 | 15.1 | |
MinION (T4) | 63,622 | 52,952 | 96.8 | 0.0 | |
B11 | MiSeq | 300,949 | – | 98.5 | 18.7 |
MinION (T0) | 55,562 | 28,028 | 98.5 | 1.6 | |
MinION (T4) | 29,242 | 21,861 | 98.8 | 0.0 | |
B13 | MiSeq | 410,523 | – | 96.3 | 4.2 |
MinION (T0) | 108,020 | 34,912 | 97.0 | 1.5 | |
MinION (T4) | 53,586 | 45,919 | 96.8 | 0.0 | |
B14 | MiSeq | 226,434 | – | 98.6 | 26.2 |
MinION (T0) | 229,720 | 144,507 | 99.1 | 0.6 | |
MinION (T4) | 81,806 | 61,098 | 98.6 | 0.0 |
