Table 1 Structural characteristics and physio-chemical properties of dicer-like (DCL), argonaute (AGO) and RNA dependent RNA polymerase (RDR) genes from S. spontaneum.

From: Genome-wide identification and characterization of DCL, AGO and RDR gene families in Saccharum spontaneum

Gene name

Gene ID

Location

Protein

Chromosome

Start

End

CDS (bp)

Length (aa)

Mw (Da)

PI

Dicer-like (DCL)

SsDCL1a

Sspon.01G0001230-3D

Chr1D

3,692,925

3,701,074

4,377

1,458

163,204.71

6.05

SsDCL1b

Sspon.01G0001230-1A

Chr1A

3,976,165

3,983,525

4,770

1,590

178,065.62

6.05

SsDCL2

Sspon.01G0022370-1A

Chr1A

81,960,057

81,976,273

3,699

1,233

139,512.97

7.06

SsDCL3

Sspon.01G0019860-4D

Chr1D

71,661,374

71,672,007

4,752

1584

179,009.05

6.24

Argonaute (AGO)

SsAGO2a

Sspon.05G0030950-2D

Chr5D

11,880,179

11,884,678

3,066

1,021

111,963.65

8.73

SsAGO2b

Sspon.05G0037340-1D

Chr5D

11,924,233

11,928,734

2,763

921

100,646.66

7.81

SsAGO3a

Sspon.05G0030960-1C

Chr5C

2,396,093

2,401,132

3,048

1,015

110,049.24

9.30

SsAGO3b

Sspon.05G0030950-1C

Chr5C

2,386,282

2,391,173

2,904

967

104,620.95

9.27

SsAGO3c

Sspon.05G0030950-1P

Chr5D

12,513,102

12,517,597

3,036

1,011

109,860.1

9.35

SsAGO4

Sspon.02G0016200-2D

Chr3D

39,536,146

39,547,268

2,838

946

105,523.71

8.60

SsAGO5a

Sspon.01G0028360-2B

Chr1B

96,848,274

96,854,895

3,165

1,054

115,793.38

9.42

SsAGO5b

Sspon.01G0014460-3D

Chr1D

87,130,069

87,135,808

2,742

913

102,643.41

9.28

SsAGO5c

Sspon.01G0014460-1A

Chr1A

41,213,733

41,219,461

2,418

806

90,379.42

9.55

SsAGO5d

Sspon.01G0014460-2B

Chr1B

96,914,953

96,920,845

2,784

927

103,595.76

9.55

SsAGO6a

Sspon.07G0020900-1A

Chr7A

78,332,899

78,336,592

1,902

634

70,983.26

9.46

SsAGO6b

Sspon.07G0020900-2D

Chr7D

60,984,388

60,994,488

2,070

689

77,218.74

9.34

SsAGO10a

Sspon.08G0006580-1P

Chr8D

17,872,226

17,876,344

2,271

757

83,975.06

9.22

SsAGO10b

Sspon.08G0006580-1A

Chr8A

20,403,262

20,409,634

2,829

942

105,347.29

9.47

SsAGO10c

Sspon.08G0006580-2B

Chr8B

18,085,409

18,091,645

2,394

797

88,300.59

9.67

SsAGO10d

Sspon.08G0006580-4D

Chr8D

17,765,548

17,771,337

1,884

628

71,264.01

9.40

SsAGO10e

Sspon.08G0006580-3C

Chr8C

9,379,029

9,385,180

2,916

971

108,586.36

9.43

SsAGO18a

Sspon.02G0007830-1A

Chr2A

22,748,211

22,753,686

3,099

1,032

113,076.36

9.47

SsAGO18b

Sspon.01G0024300-1A

Chr1A

87,229,183

87,234,462

2,382

793

88,734.95

9.29

SsAGO18c

Sspon.01G0024300-3D

Chr1D

84,919,502

84,924,770

2,364

787

88,118.01

9.00

SsAGO18d

Sspon.02G0007830-2D

Chr2D

16,391,380

16,396,270

2,754

918

100,666.07

9.44

RNA dependent RNA Polymerase (RDR)

SsRDR1a

Sspon.04G0003980-2D

Chr4D

12,916,500

12,921,015

3,324

1,107

126,692.84

7.73

SsRDR1b

Sspon.04G0003980-1A

Chr4A

12,309,373

12,314,472

3,348

1,115

127,601.91

7.53

SsRDR2a

Sspon.05G0009620-1A

Chr5A

27,714,217

27,719,638

3,414

1,137

126,512.75

6.67

SsRDR2b

Sspon.05G0009620-2B

Chr5B

22,682,674

22,688,038

3,315

1,104

122,789.35

6.50

SsRDR2c

Sspon.05G0009620-3C

Chr5C

19,106,947

19,112,258

3,414

1,137

126,557.88

6.39

SsRDR2d

Sspon.05G0009620-4D

Chr5D

30,160,562

30,165,865

2,967

989

110,364.29

7.29

SsRDR3

Sspon.05G0014430-3C

Chr5C

48,023,413

48,044,408

2076

691

79,290.78

7.29

SsRDR4

Sspon.05G0014430-4D

Chr5D

52,146,251

52,168,613

2049

683

77,901.79

6.25

SsRDR5

Sspon.03G0023160-2C

Chr3C

89,299,759

89,307,281

2,514

838

96,153.93

8.70

SsRDR6a

Sspon.08G0019290-1B

Chr8B

11,200,927

11,205,278

3,240

1,079

120,677.59

7.10

SsRDR6b

Sspon.08G0019290-2D

Chr8D

11,219,834

11,222,839

3,006

1,001

111,860.59

8.24

  1. CDS coding sequence, MW molecular weight, IP isoelectric point.
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