Table 2 Basic mapping statistics for the strongly positive Y. pestis samples after duplicate removal and quality filtering.
Sample | Aligned reads | Coverage ≥ 1x (%) | Coverage ≥ 2x (%) | Coverage ≥ 3x (%) | Mean coverage whole genome |
|---|---|---|---|---|---|
Chromosome | |||||
G701 | 237,557 | 92.74 | 75.66 | 53.77 | 3.09x |
G488 | 597,757 | 98.85 | 95.83 | 89.76 | 6.79x |
pMT1 | |||||
G701 | 6,540 | 97.74 | 89.33 | 75.03 | 4.16x |
G488 | 17,450 | 99.65 | 99.04 | 97.52 | 9.68x |
pPCP1 | |||||
G701 | 4,544 | 98.75 | 94.42 | 88.24 | 30.07x |
G488 | 11,893 | 99.80 | 99.14 | 98.72 | 68.28x |
pCD1 | |||||
G701 | 6,659 | 99.35 | 96.30 | 89.55 | 5.9x |
G488 | 26,728 | 99.99 | 99.14 | 98.72 | 20.99x |
