Table 2 In walnuts, significant QTL associated with time of leaf budburst and flowering characters.

From: Major QTL with pleiotropic effects controlling time of leaf budburst and flowering-related traits in walnut (Juglans regia L.)

QTL

Traits

Seasons

Best marker

LG

Pos

Best P

MAF

Best R2

QTL01

1, 2, 6

All

100044119|F|0–5:A>C–5:A>C

1

860016

1.5E − 06

0.31

0.08

QTL02

4, 6, 12

18, M

7409645|F|0–50:A>T–50:A>T

3

16331345

4.88E − 06

0.49

0.11

QTL03

1, 2, 3, 6

All

7405671|F|0–60:T>G–60:T>G

4

4553313

6.25E − 10

0.33

0.12

QTL04

10, 13

16, 17, M

12416095|F|0–51:G>A–51:G>A

4

20274583

5.18E − 07

0.20

0.13

QTL05

1, 2, 3, 4, 5, 6, 11

All

100010320|F|0–47:C>T–47:C>T

4

28418795

2.71E − 12

0.26

0.16

QTL06

10, 13

All

7397430|F|0–16:G>A–16:G>A

7

437368

2.3E − 09

0.27

0.17

QTL07

3, 4, 5, 6, 12

All

7397034

8

3779475

2.49E − 09

0.23

0.2

QTL08

3, 4, 6, 12

17, 18, M

100033978|F|0–67:A>G–67:A>G

8

4413427

9.9E − 07

0.23

0.12

QTL09

10, 13

16, 17, M

7402360|F|0–17:C>G–17:C>G

8

12387115

1.80E − 09

0.23

0.19

QTL10

8, 10, 13

All

12413277

8

14505338

5.14E − 12

0.35

0.23

QTL11

10, 13

All

12416675|F|0–66:T>A–66:T>A

8

21210755

2.8E − 08

0.18

0.15

QTL12

10, 13

16, 17, M

7398458|F|0–28:T>A–28:T>A

8

23526767

5.7E − 07

0.17

0.12

QTL13

3, 4, 5, 6, 12

17, 18, M

23446637|F|0–32:T>C–32:T>C

11

19125490

3.15E − 07

0.14

0.15

QTL14

4, 6, 12

17, 18, M

100050947

12

12458779

7.5E − 09

0.12

0.18

QTL15

1, 2, 4, 6

All

23447831|F|0–31:T>G–31:T>G

16

2561937

2.19E − 08

0.28

0.11

QTL16

10, 13

16, 17, M

7406005

NA

NA

8.34E − 11

0.45

0.22

  1. Markers were clustered into QTL based on their LD and the marker with the lowest-value across traits and seasons were reported here. Detailed informations can be found in Supplementary Data 2.