Table 4 Genotyping error rate of six bi-parental populations.

From: Applications of genotyping-by-sequencing (GBS) in maize genetics and breeding

Pop

Line

All loci

Homozygous loci

Heterozygous loci

Unimputed (%)

Imputed (%)

Unimputed (%)

Imputed (%)

Unimputed (%)

Imputed (%)

Pop3

DTPC9F104

0.85

0.57

0.30

0.05

0.55

0.52

CML491

0.87

0.31

0.25

0.12

0.62

0.19

F1

8.21

10.42

3.38

0.68

4.83

9.74

Pop4

CKL09001

0.82

0.25

0.27

0.11

0.55

0.14

CML444

0.67

0.18

0.18

0.08

0.49

0.10

Pop5

CLWN201

0.85

0.39

0.14

0.04

0.71

0.35

CML494

0.61

0.33

0.09

0.07

0.52

0.26

F1

7.97

5.74

2.43

0.38

5.54

5.36

Pop6

LPSC7F64

0.63

0.46

0.07

0.08

0.56

0.38

CML495

1.06

0.74

0.17

0.09

0.89

0.65

Pop7

B73

0.56

0.38

0.16

0.19

0.40

0.19

CML247

0.51

0.38

0.06

0.06

0.45

0.32

Pop8

B73

0.56

0.38

0.16

0.19

0.40

0.19

Mo17

0.53

0.35

0.10

0.13

0.43

0.22

Average

Total

1.76

1.49

0.55

0.16

1.21

1.33

Parents

0.70

0.45

0.16

0.11

0.54

0.33

F1

8.09

8.08

2.91

0.53

5.19

7.55

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