Table 2 Codon positions under positive selection detected by branch-site model using codeML, FITMODEL, and aBSREL for dataset III.
From: The role of selection in the evolution of marine turtles mitogenomes
Marker | codeML | FITMODEL | aBSREL | Lineage |
|---|---|---|---|---|
Positive selected sites (PP) | Positive selected sites | % of positive selected sites | ||
ATP6 | 7 L (0.84) | 0.0 | 0.0 | – |
ATP8 | 0.0 | 0.0 | 0.0 | – |
COX1 | 0.0 | 0.0 | 0.0 | – |
COX2 | 0.0 | 0.0 | 0.0 | – |
COX3 | 55 A (0.57) | 0.0 | 0.0 | Chelonioidea |
CYTB | 98 V (0.74) | 0.0 | 0.0 | Chelonioidea |
ND1 | 0.0 | 0.0 | 0.0 | – |
ND2 | 0.0 | 0.0 | 0.0 | – |
ND3 | 0.0 | 0.0 | 0.0 | – |
ND4 | 169 Q (0.96*) | 36 (> 0.90*) | 0.0 | Chelonioidea |
ND4L | 0.0 | 0.0 | 0.0 | – |
ND5 | 185 L (0.98*), 511 V (0.67), 596 L (0.88) | 0.0 | 4.2% | Chelonioidea ancestral branch |
ND6 | 19–(0.67), 247 S (0.74) | 0.0 | 24% | Eretmochelys imbricata |
