Table 3 Codon positions under positive selection detected by site model using FUBAR, MEME, and FITMODEL for dataset IV.
From: The role of selection in the evolution of marine turtles mitogenomes
Marker | FUBAR | MEME | FITMODEL | Lineage |
|---|---|---|---|---|
Positive selected sites | Positive selected sites | Positive | ||
Selected sites | ||||
ATP6 | 7 L (0.84) | 179 (> 0.05) | 7 (> 0.9*) | Chelonia mydas + Natator depressus |
ATP8 | 0.0 | 47 (> 0.05) | 47 (> 0.85) | Cheloniidae |
COX1 | 0.0 | 0.0 | 0.0 | – |
COX2 | 0.0 | 0.0 | 0.0 | – |
COX3 | 55 A (0.57) | 0.0 | 0.0 | |
CYTB | 98 V (0.74) | 0.0 | 19 (> 0.85) | Caretta caretta |
ND1 | 0.0 | 0.0 | 0.0 | – |
ND2 | 0.0 | 0.0 | 131 (> 0.76) | Chelonia mydas |
ND3 | 0.0 | 0.0 | 0.0 | – |
ND4 | 169 (0.95*) | 181 (< 0.05*) | 169 (> 0.90*) 181 (> 0.76) | Cheloniidae Erytmochelys imbricata |
ND4L | 0.0 | 58 (< 0.05*) | 0.0 | – |
ND5 | 3 (0.92*) | 3 (0.05*) | 0.0 | – |
ND6 | 0.0 | 0.0 | 7 (> 0.76) | Dermochelys coriacea |
