Table 1 Assembly statistics and genomic features of four Entomospira isolates.
Isolates features | BR149 | BR151 | BR193 | BR208 |
|---|---|---|---|---|
Host | Culex pipiens | Culex pipiens | Aedes cinereus | Culex pipiens |
Year of isolation | 1999 | 1999 | 2000 | 2001 |
Partial 16S rRNA gene characterization | Candidatus Spironema culicis | Failed determination | Candidatus Spironema Culicis | Candidatus Spironema Culicis |
Assembly statistic | BR149 | BR151 | BR193 | BR208 |
|---|---|---|---|---|
Genome size (bp) | 1,771,032 | 1,772,169 | 1,785,838 | 1,680,798 |
Number of contigs | 8 | 13 | 9 | 7 |
GC content (%) average | 45.8 | 45.8 | 40.4 | 38.5 |
Shortest contig size | 302 | 302 | 279 | 423 |
Median sequence size | 3028 | 3005 | 22,271 | 38,620 |
Mean sequence size | 221,379 | 136,320 | 198,426 | 240,114 |
Longest contig size | 1,639,683 | 736,781 | 1,486,042 | 1,418,720 |
N50 value | 1,639,683 | 427,344 | 1,486,042 | 1,418,720 |
L50 value | 1 | 2 | 1 | 1 |
Coverage | 146 | 88 | 104 | 91 |
Number of plasmids | 2 | 2 | 4/3 | 3 |
Sizes of plasmids in bp (% G+C) | 98,591 (45%) | 98,591 (45%) | 161,313 (42%)/157,873/118,948# | 132,668 (39.5%) |
28,402 (36%) | 28,402 (36%) | 107,998 (45.3%)/107,915/107,998 | 110,286 (34%) | |
22,271 (33.6%)/22,199/22,271 | 21,443 (34%) | |||
8241 (34%)/8569/missing |
Annotation stats | BR149 | BR151 | BR193 | BR208 |
|---|---|---|---|---|
CDS | 1687 | 1693 | 1707 | 1576 |
RNAs | 47 | 47 | 45 | 46 |
tRNAs | 41 | 41 | 41 | 41 |
rRNAs | 6 | 6 | 4 | 5 |
Hypothetical proteins | 1012 | 1017 | 1034 | 913 |
ANI values in % | BR149 | BR151 | BR193 | BR208 |
|---|---|---|---|---|
BR149 | 100 | 99 | 86 | 86 |
BR151 | 99 | 100 | 86 | 86 |
BR193 | 86 | 86 | 100 | 84 |
BR208 | 86 | 86 | 84 | 100 |
