Table 1 Information on the Nups in apple.
From: Genomic identification and expression analysis of nuclear pore proteins in Malus domestica
Subcomplex | Gene | Gene locus | Location | CDS (bp) | Peptide (aa) | AtNPC | E value |
|---|---|---|---|---|---|---|---|
Nup62 subcomplex | MdNup54 | MD16G1117500 | Chr16:8338184..8341499 | 1200 | 400 | AtNup54 | 1.5394E−161 |
MdNup62 | MD07G1110700 | Chr07:12755345..12762516 | 2172 | 724 | AtNup62 | 1.69142E−135 | |
Nup93 subcomplex | MdNup35a | MD09G1205800 | Chr09:19658131..19661853 | 993 | 331 | AtNup35 | 9.05037E−151 |
MdNup35b | MD17G1186700 | Chr17:22318731..22322549 | 993 | 331 | AtNup35 | 3.02073E−147 | |
MdNup93a | MD12G1080600 | Chr12:9823197..9837227 | 2592 | 864 | AtNup93 | 0 | |
MdNup93b | MD14G1076700 | Chr14:8681861..8695666 | 2589 | 863 | AtNup93 | 0 | |
MdNup155 | MD13G1020400 | Chr13:1280351..1287904 | 4407 | 1469 | AtNup155 | 0 | |
MdNup205 | MD02G1032900 | Chr02:2574878..2590132 | 5643 | 1881 | AtNup205 | 0 | |
Nup107 subcomplex | MdNup43 | MD10G1281400 | Chr10:37201121..37203464 | 1053 | 351 | AtNup43 | 1.53139E−127 |
MdNup85 | MD15G1093200 | Chr15:6453444..6459227 | 2175 | 725 | AtNup85 | 0 | |
MdNup96a | MD08G1215300 | Chr08:27827088..27833504 | 3096 | 1032 | AtNup96 | 0 | |
MdNup96b | MD15G1399200 | Chr15:50011301..50017471 | 3348 | 1116 | AtNup96 | 0 | |
MdNup107a | MD09G1178100 | Chr09:15235815..15246849 | 3246 | 1082 | AtNup107 | 0 | |
MdNup107b | MD17G1148600 | Chr17:13573595..13584264 | 3219 | 1073 | AtNup107 | 0 | |
MdNup133 | MD17G1113600 | Chr17:9738615..9745545 | 3915 | 1305 | AtNup133 | 0 | |
MdNup160 | MD10G1009800 | Chr10:1350846..1368727 | 4521 | 1507 | AtNup160 | 0 | |
MdSec13a | MD09G1041000 | Chr09:2640031..2641626 | 903 | 301 | AtSeh13 | 1.71982E−170 | |
MdSec13b | MD17G1042300 | Chr17:3101074..3103384 | 903 | 301 | AtSeh13 | 4.377E−173 | |
MdSeh1a | MD06G1103700 | Chr06:24176846..24179550 | 978 | 326 | AtSeh1 | 2.26035E−138 | |
MdSeh1b | MD14G1122800 | Chr14:19731969..19734722 | 981 | 327 | AtSeh1 | 8.91422E−139 | |
Others | MdNup50a | MD09G1214400 | Chr09:21079805..21082646 | 1272 | 424 | AtNup50a | 4.0775E−100 |
MdNup50b | MD17G1196800 | Chr17:23575668..23578205 | 1293 | 431 | AtNup50a | 3.54614E−76 | |
MdNup88 | MD01G1152200 | Chr01:26080908..26086372 | 2430 | 810 | AtNup88 | 0 | |
MdNup98a | MD06G1126300 | Chr06:26827660..26834106 | 2973 | 991 | AtNup98a/b | 0 | |
MdNup98b | MD14G1142000 | Chr14:23465594..23472220 | 3069 | 1023 | AtNup98a/b | 0 | |
MdNup136a | MD02G1257800 | Chr02:31057936..31066675 | 3885 | 1294 | AtNup136 | 5.85327E−125 | |
MdNup136b | MD07G1063100 | Chr07:5916974..5924113 | 2997 | 998 | AtNup136 | 2.51999E−117 | |
MdNDC1a | MD05G1278400 | Chr05:41276844..41285832 | 1647 | 549 | AtNDC1 | 1.18565E−172 | |
MdNDC1b | MD10G1257000 | Chr10:35129858..35133484 | 1653 | 551 | AtNDC1 | 2.80708E−159 | |
MdTpr/NUA | MD05G1240600 | Chr05:37117000..37137248 | 6306 | 2102 | AtTpr/NUA | 0 | |
MdCGI | MD04G1000600 | Chr04:62175..67597 | 1173 | 391 | AtCG1 | 3.48934E−63 | |
MdRAE1a | MD08G1221600 | Chr08:28411242..28416688 | 1044 | 348 | AtRAE1 | 0 | |
MdRAE1b | MD15G141250 | Chr15:51213459..51219697 | 1032 | 344 | AtRAE1 | 0 | |
MdALADIN | MD12G1112000 | Chr12:17757407..17766342 | 1638 | 546 | AtALADIN | 1.53421E−105 | |
MdGP210 | MD17G1026700 | Chr17:1907720..1919647 | 5913 | 1971 | AtGP210 | 0 | |
MdHOS1 | MD04G1060900 | Chr04:8017657..8024612 | 2919 | 973 | AtHOS1 | 0 | |
MdGLE1 | MD13G1104500 | Chr13:7472044..7478918 | 1935 | 645 | AtGLE1 | 1.86679E−127 | |
|  | MdCPR5 | MD01G1017700 | Chr01:7756340..7761421 | 1860 | 620 | AtCPR5 | 2.16518E−85 |
