Table 6 Binding of K5, K17, K18 and MRS 1220 to the A3R orthosteric binding area.

From: Pharmacological characterisation of novel adenosine A3 receptor antagonists

 

EvdWa

EELb

ΔGsolvc

ΔGeffd

pKB/pKie

Schild analysisf

NanoBRETg

Radioligand bindingh

MRS 1220

64.6 ± 2.6

11.5 ± 2.5

39.2 ± 2.4

36.9 ± 3.6

10.07

9.99 ± 0.04

8.2–9.2

K5

42.0 ± 2.7

9.6 ± 5.2

30.8 ± 4.3

20.8 ± 4.3

ND

6.06 ± 0.09

5.02

K17

47.0 ± 2.4

8.8 ± 2.7

29.8 ± 2.9

25.9 ± 3.6

6.35

6.33 ± 0.03

5.38

K18

46.3 ± 2.9

7.5 ± 2.4

26.9 ± 3.1

26.9 ± 2.7

7.20

6.92 ± 0.10

6.05

  1. Effective binding energies (ΔGeff) and energy components (EvdW, EEL, ΔGsolv) in kcal mol−1 calculated using the MM-PBSA method.
  2. avdW energy of binding calculated using molecular mechanics.
  3. bElectrostatic energy of binding calculated using molecular mechanics.
  4. cDifference in solvation energy between the complex, the protein and the ligand, i.e. Gcomplex, solv—(Gprotein, solv + Gligand, solv).
  5. dEffective binding free energy calculated as ΔGeff = ΔEΜΜ + ΔGsol; in Table 6, ΔEΜΜ = ΕvdW + EEL (see “Materials and methods”).
  6. eEquilibrium dissociation constant of MRS 1220, K5, K17 and K18 as determined through three independent experimental approaches: Schild analysis (pKB), NanoBRET (pKi) or radioligand binding (pKi).
  7. fpKB obtained through Schild analysis in A3R stably expressing Flp-In CHO cells.
  8. gpKi (mean ± SEM) obtained in NanoBRET binding assays using Nluc-A3R stably expressing HEK 293 cells and determined through fitting our “Kinetics of competitive binding, rapid competitor dissociation” model or in the case of MRS 1220 through fitting with the ‘Kinetics of competitive binding’ model with a determined Kon (k3) and Koff (k4) rate of 3.25 ± 0.28 × 108 M−1 min−1 and 0.0248 ± 0.005 min−1, respectively.
  9. hpKi values previously published for K5, K17 and K18 (Lagarias et al., 2018) or MRS 1220 (Stoddart et al., 2015) through radioligand binding assays.