Table 3 Species richness and diversity in gut contents of anchovy (E.enc: Engraulis encrasicolus) and sardine (S.pil: Sardina pilchardus), averaged by prey groups (number of prey species), areas and methods. ‘Total’ denotes results for all the areas together. Shannon diversity index, calculated for gut contents analysed under the microscope, is presented as the mean ± standard error. Pairwise beta-diversity was calculated for anchovy and sardine according to Koleff et al.39.
Microscope analysis | DNA metabarcoding | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GSA07 | GSA06-North | GSA06-South | Total | GSA07 | GSA06-North | GSA06-South | Total | |||||||||
E.enc | S.pil | E.enc | S.pil | E.enc | S.pil | E.enc | S.pil | E.enc | S.pil | E.enc | S.pil | E.enc | S.pil | E.enc | S.pil | |
Calanoids | 8 | 7 | 16 | 11 | 14 | 13 | 16 | 13 | 10 | 14 | 19 | 22 | 25 | 26 | 28 | 29 |
Cyclopoids | 2 | 2 | 3 | 4 | 4 | 4 | 5 | 5 | 1 | 2 | 4 | 2 | 4 | 5 | 5 | 5 |
Harpacticoids | 3 | 4 | 5 | 5 | 3 | 5 | 5 | 6 | 1 | 2 | 4 | 3 | 4 | 4 | 5 | 4 |
Euphausiacea ord | 3 | 0 | 5 | 3 | 5 | 6 | 5 | 6 | 0 | 0 | 3 | 0 | 2 | 2 | 3 | 2 |
Decapoda ord | 1 | 0 | 4 | 4 | 4 | 4 | 4 | 4 | 7 | 9 | 15 | 11 | 12 | 16 | 19 | 19 |
Other Malacostraca | 3 | 0 | 2 | 1 | 2 | 0 | 4 | 1 | 3 | 1 | 1 | 1 | 2 | 3 | 5 | 4 |
Crustacean remains | 0 | 1 | 1 | 0 | 2 | 2 | 2 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Mollusca ph | 2 | 1 | 2 | 1 | 2 | 2 | 2 | 2 | 0 | 1 | 3 | 5 | 9 | 6 | 10 | 7 |
Cladocerans | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 4 | 3 | 4 | 2 | 3 | 3 | 4 |
Actinopterygii cl | 0 | 1 | 1 | 2 | 2 | 2 | 2 | 2 | 4 | 4 | 4 | 5 | 7 | 5 | 12 | 9 |
Others | 0 | 1 | 1 | 1 | 2 | 2 | 2 | 3 | 6 | 11 | 22 | 30 | 26 | 23 | 31 | 35 |
*Diatoms | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 26 | 32 | 36 | 39 | 32 | 36 | 38 | 41 |
Species Richness | 23 | 17 | 41 | 33 | 41 | 41 | 48 | 46 | 33 | 48 | 78 | 83 | 93 | 93 | 121 | 118 |
Shannon Diversity | 1.27 ± 0.09 | 1.29 ± 0.08 | 1.57 ± 0.10 | 1.50 ± 0.11 | 1.72 ± 0.11 | 1.77 ± 0.07 | 1.52 ± 0.17 | 1.56 ± 0.17 | – | – | – | – | – | – | – | – |
Beta-Diversity | 0.35 | 0.24 | 0.17 | 0.14 | 0.44 | 0.28 | 0.27 | 0.20 | ||||||||