Table 1 Top 30 genes expressed in cryptal mesenchymal cells.
Rank | In vivo upper mucosa | In vivo cryptal layer | Ex vivo cryptal layer | Ex vivo upper mucosa | GeneSymbol | Description |
|---|---|---|---|---|---|---|
1 | − 0.1352253 | 10.349305 | 1.0953941 | − 0.032011986 | Lepr | Leptin receptor (Lepr), transcript variant 3, mRNA [NM_001122899] |
2 | − 1.7839279 | 9.163433 | 1.4320621 | − 0.32384896 | Bmp5 | Bone morphogenetic protein 5 (Bmp5), mRNA [NM_007555] |
0 | 8.42976 | 0.75516224 | − 1.6026034 | Bmp5 | Bone morphogenetic protein 5 (Bmp5), mRNA [NM_007555] | |
3 | − 5.845847 | 8.349145 | 0 | − 1.0225489 | Adamdec1 | ADAM-like, decysin 1 (Adamdec1), mRNA [NM_021475] |
4 | − 0.036146164 | 7.296133 | 1.1356153 | − 0.10349226 | Pcdh12 | Protocadherin 12 (Pcdh12), mRNA [NM_017378] |
5 | 0.8064318 | 7.193366 | 0 | − 1.9055712 | Gli1 | GLI-Kruppel family member GLI1 (Gli1), mRNA [NM_010296] |
6 | − 0.31227016 | 7.19128 | 0 | − 1.1451445 | Col15a1 | Collagen, type XV, alpha 1 (Col15a1), mRNA [NM_009928] |
7 | − 0.25886297 | 6.7288184 | 1.0249934 | − 0.65438557 | Syne1 | Spectrin repeat containing, nuclear envelope 1 (Syne1), transcript variant 5, mRNA [NM_001347732] |
8 | 0.40697193 | 6.3136005 | 0 | − 1.2896981 | Lin7a | Lin-7 homolog A (C. elegans) (Lin7a), transcript variant 1, mRNA [NM_001039354] |
9 | 4.5943704 | 6.2623343 | 0 | − 2.2177994 | Stxbp6 | Syntaxin binding protein 6 (amisyn) (Stxbp6), mRNA [NM_144552] |
10 | 0 | 6.2549396 | 1.8562856 | − 1.847434 | Grrp1 | Glycine/arginine rich protein 1 (Grrp1), mRNA [NM_001099296] |
11 | 1.4523826 | 5.9267335 | 0 | − 1.1692836 | Cadm3 | Cell adhesion molecule 3 (Cadm3), mRNA [NM_053199] |
12 | 0.21515155 | 5.9007926 | 0 | − 2.616846 | – | UI-M-EX0-byj-o-02-0-UI.r1 NIH_BMAP_EX0 cDNA clone IMAGE: 5,719,129 5′, mRNA sequence [CB248850] |
13 | 0.17255163 | 5.841345 | 0 | − 1.2357674 | Agtr1b | Angiotensin II receptor, type 1b (Agtr1b), mRNA [NM_175086] |
14 | 2.6327944 | 5.812486 | 0 | − 1.8589058 | Irf8 | Interferon regulatory factor 8 [Source:MGI Symbol;Acc:MGI:96395] [ENSMUST00000162775] |
15 | − 2.760572 | 5.737793 | 1.2296844 | − 0.068935394 | Prdm6 | PR domain containing 6 (Prdm6), mRNA [NM_001033281] |
16 | − 1.346303 | 5.5345974 | 0.86455584 | − 1.5482342 | Foxl1 | Forkhead box L1 (Foxl1), mRNA [NM_008024] |
17 | − 1.9157376 | 5.5081615 | 1.5659752 | − 0.92323875 | Negr1 | Neuronal growth regulator 1 (Negr1), transcript variant 1, mRNA [NM_001039094] |
18 | − 2.9770136 | 5.4516544 | 1.3360395 | − 0.24065113 | Bmp4 | Bone morphogenetic protein 4 (Bmp4), transcript variant 1, mRNA [NM_007554] |
19 | − 3.0122108 | 5.441319 | 0.7840228 | − 0.26249528 | Bean1 | Brain expressed, associated with Nedd4, 1 (Bean1), transcript variant 1, mRNA [NM_001141922] |
20 | − 0.8304815 | 5.440546 | 0.45523453 | − 0.61619663 | Ltbp4 | Latent transforming growth factor beta binding protein 4 (Ltbp4), transcript variant 1, mRNA [NM_175641] |
21 | − 4.281811 | 5.415837 | 0.8549876 | − 0.26267695 | Tcf21 | Transcription factor 21 (Tcf21), mRNA [NM_011545] |
22 | 0.30940437 | 5.3867254 | 0 | − 1.0120187 | Cntn4 | Contactin 4 (Cntn4), transcript variant 1, mRNA [NM_001109749] |
23 | − 0.0352149 | 5.2685137 | 0.8375006 | − 0.8934727 | Hcar1 | Hydrocarboxylic acid receptor 1 (Hcar1), mRNA [NM_175520] |
24 | − 1.1227269 | 5.265641 | 0.48159218 | − 1.4391389 | Negr1 | Neuronal growth regulator 1 (Negr1), transcript variant 2, mRNA [NM_177274] |
25 | 0.41755295 | 5.2641068 | 0 | − 1.005084 | Tril | TLR4 interactor with leucine-rich repeats (Tril), mRNA [NM_025817] |
26 | − 0.65405416 | 5.2553177 | 0.27284336 | − 1.1687546 | Bend5 | BEN domain containing 5 (Bend5), transcript variant 1, mRNA [NM_026279] |
27 | 0.6547599 | 5.2338214 | 0 | − 1.1381359 | Ripply3 | Ripply transcriptional repressor 3 (Ripply3), mRNA [NM_133229] |
28 | 0 | 5.189296 | 1.0285192 | − 0.7719319 | Wnt2 | Wingless-type MMTV integration site family, member 2 (Wnt2), mRNA [NM_023653] |
29 | 0 | 5.1865263 | 0.31024742 | − 1.5084703 | Efcc1 | EF hand and coiled-coil domain containing 1 [Source:MGI Symbol;Acc:MGI:3611451] [ENSMUST00000160743] |
30 | 1.6226387 | 5.186082 | 0 | − 1.0252223 | Plac9a | Placenta specific 9a (Plac9a), mRNA [NM_207229] |
