Table 1 Summary of raw, trimmed and mapped reads.
dpi | Raw reads | Trimmed reads | Mapped in pair | Mapped in broken pair | Reads not mapped | |
|---|---|---|---|---|---|---|
0 | R1 | 69,496,834 | 58,911,860 | 47,957,944 (81.41%) | 3,765,047 (6.39%) | 7,188,869 (12.2%) |
R2 | 67,751,426 | 57,247,830 | 44,087,180 (77%) | 2,598,916 (4.54%) | 10,561,734 (18.45%) | |
R3 | 68,100,290 | 57,898,240 | 44,020,552 (76%) | 4,188,992 (7.24%) | 9,688,696 (16.73%) | |
3 | R1 | 64,510,988 | 54,944,488 | 42,957,964 (73.55%) | 2,372,524 (4.32%) | 9,614,000 (17.5%) |
R2 | 64,643,682 | 55,052,202 | 40,490,580 (73.55%) | 6,073,371 (11.03%) | 8,488,251 (15.42%) | |
R3 | 62,733,848 | 53,080,454 | 38,669,076 (72.85%) | 4,879,719 (9.19%) | 9,531,659 (17.96%) |
