Table 1 Genes down-regulated in DDR1 silenced Hepatic Stellate Cells.

From: Silencing of sinusoidal DDR1 reduces murine liver metastasis by colon carcinoma

PANTHER GO-slim biological process

Upload_Genes (976)

(P value)

Granulocyte chemotaxis (GO:0071621)

19

8.79E−09

Leukocyte migration (GO:0050900)

22

1.53E−09

Leukocyte chemotaxis (GO:0030595)

19

6.89E−08

Positive regulation of GTPase activity (GO:0043547)

9

1.48E−02

Inflammatory response (GO:0006954)

33

7.79E−14

Defense response to virus (GO:0051607)

10

1.26E−02

Cellular response to tumor necrosis factor (GO:0071356)

9

3.81E−02

Positive regulation of ERK1 and ERK2 cascade (GO:0070374)

10

1.58E−02

Cellular response to cytokine stimulus (GO:0071345)

26

7.94E−08

Response to cytokine (GO:0034097)

28

5.32E−08

Regulation of hydrolase activity (GO:0051336)

17

6.66E−04

Cytokine-mediated signaling pathway (GO:0019221)

21

3.78E−05

Cell migration (GO:0016477)

35

9.21E−10

Response to lipopolysaccharide (GO:0032496)

16

2.88E−03

Cellular response to lipopolysaccharide (GO:0071222)

14

1.41E−02

Localization of cell (GO:0051674)

35

5.01E−08

Cell motility (GO:0048870)

35

5.01E−08

Response to organic substance (GO:0010033)

40

6.38E−06

Divalent inorganic cation homeostasis (GO:0072507)

22

3.94E−02

Regulation of catalytic activity (GO:0050790)

26

7.82E−03

Defense response (GO:0006952)

47

3.50E−06

MAPK cascade (GO:0000165)

27

1.61E−02

Apoptotic process (GO:0006915)

33

5.74E−03

Cell adhesion (GO:0007155)

42

4.06E−04

Biological adhesion (GO:0022610)

42

4.06E−04

Signal transduction by protein phosphorylation (GO:0023014)

28

4.58E−02

Programmed cell death (GO:0012501)

33

9.07E−03

Regulation of molecular function (GO:0065009)

38

3.93E−03

Protein phosphorylation (GO:0006468)

43

8.99E−04

Cell death (GO:0008219)

33

2.62E−02

Response to stress (GO:0006950)

53

1.95E−04

Immune system process (GO:0002376)

88

5.44E−08

Response to chemical (GO:0042221)

61

2.43E−04

Response to stimulus (GO:0050896)

125

5.10E−11

Cellular protein metabolic process (GO:0044267)

83

1.40E−03

Cellular macromolecule metabolic process (GO:0044260)

83

1.47E−03

Intracellular signal transduction (GO:0035556)

63

4.87E−02

Signal transduction (GO:0007165)

127

3.92E−04

Cellular response to stimulus (GO:0051716)

139

1.63E−03

  1. Genes down-regulated in DDR1 silenced hepatic stellate cell according to the gene array were introduced into the AmiGO 2 Gen onthology database by using Biological Process analysis. The table shows the gene number into each Go-slim Biological process Bonferroni-corrected for P < 0.05.