Table 2 Repeat proportions [%] estimated for unassembled sequence reads and genome assemblies of S. intermedia clones 8410 and 7747.
Repeat | 8410 | 8410 | 7747 |
|---|---|---|---|
Illumina reads | Assembly | Assembly | |
Ty3/gypsy | |||
Athila | 7.44 | 7.23 | 8.57 |
CRM | 1.09 | 1.02 | 1.13 |
Reina | 0.36 | 0.32 | 0.30 |
Galadriel | 0.05 | 0.04 | 0.05 |
Tekay | 0.02 | 0.00 | 0.00 |
Ty1/copia | |||
Ale | 1.87 | 1.78 | 1.79 |
Ivana | 0.94 | 0.91 | 0.97 |
Tork | 0.69 | 0.71 | 0.70 |
Ikeros | 0.40 | 0.37 | 0.39 |
Unclassified | 0.23 | 0.21 | 0.27 |
LTR unclass | 1.01 | 0.93 | 1.08 |
LINE | 0.37 | 0.42 | 0.49 |
Satellite | 0.17 | 0.06 | 0.09 |
Microsat. (GA)n | 0.67 | 1.02 | 0.98 |
rDNA | 0.47 | 0.34 | 0.06 |
Unclassified | 4.21 | 3.11 | 3.35 |
Total | 20.00 | 18.49 | 20.22 |
RepeatScout | n.a | 23.11 | 25.58 |
