Table 1 Oligonucleotides sequences, target genes, specific amplicon size, and PCR re-cycling conditions.
Target gene | Primers sequences | Amplicon size (bp) | Amplification (35 cycles) | References | ||
|---|---|---|---|---|---|---|
Denaturation | Annealing | Extension | ||||
lt | GGTTTCTGCGTTAGGTGGAA | 605 | 94 °C 30 s | 57 °C 45 s | 72 °C 45 s | |
GGGACTTCGACCTGAAATGT | ||||||
sta | GAAACAACATGACGGGAGGT | 299 | 94 °C 30 s | 57 °C 30 s | 72 °C 30 s | |
GCACAGGCAGGATTACAACA | ||||||
eaeA | ATGCTTAGTGCTGGTTTAGG | 248 | 94 °C 30 s | 51 °C 30 s | 72 °C 30 s | |
GCCTTCATCATTTCGCTTTC | ||||||
tsh | GGT GGT GCA CTG GAG TGG | 620 | 94 °C 30 s | 54 °C 40 s | 72 °C 45 s | |
AGT CCA GCG TGA TAG TGG | ||||||
phoA | CGATTCTGGAAATGGCAAAAC | 720 | 94 °C 30 s | 60 °C 40 s | 72 °C 1 min | |
CGTGATCAGCCCTGACTATGAC | ||||||
hly | AACAAGGATAAGCACTGTTCTGGCT | 1177 | 94 °C 30 s | 54 °C 40 s | 72 °C 45 s | |
ACCATATAAGCGGTCATTCCCGTCA | ||||||
blaKPC | ATGTCACTGTATCGCCGTCT | 882 | 94 °C 1 min | 55 °C 1 min | 72 °C 1 min | |
TTACTGCCCGTTGACGCCC | ||||||
blaCTX | ATG TGC AGY ACC AGT AAR GTK ATG GC | 593 | 94 °C 30 s | 54 °C 40 s | 72 °C 45 s | |
TGG GTR AAR TAR GTS ACC AGA AYC AGC GG | ||||||
blaTEM | ATCAGCAATAAACCAGC | 516 | 94 °C 30 s | 54 °C 40 s | 72 °C 45 s | |
CCCCGAAGAACGTTTTC | ||||||