Table 2 Genetic analysis of the H1 gene of Thai S-IAV-H1N1 in this study.
From: Persistence of pdm2009-H1N1 internal genes of swine influenza in pigs, Thailand
Viruses | Subtype | H1 Cluster | H1 genea | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Antigenic site | Receptor binding site | HA cleavage site | |||||||||||||
Sa | Sb | Ca1 | Ca2 | Cb | 190 | 225 | 325–333 | ||||||||
128–129 | 156–160 | 162–167 | 187–198 | 169–173 | 206–208 | 238–240 | 140–145 | 224–225 | 78–83 | ||||||
Reference | |||||||||||||||
California/04/2009 | pdmH1N1 | pdm | PN | KKGNS | PKLSKS | TSADQQSLYQNA | INDKG | GSS | EPG | PHAGAK | RD | SLSTAS | D | D | PSIQSRGLF |
THA/CUPL65/2010 | PdmH1N1 | pdm | PN | KKGNS | PKLSKS | TSADQQSLYQNA | INDKG | GSS | EPG | PHAGAE | RD | SLSTAS | D | D | PSIQSRGLF |
THA/CU3340N/2012 | eH1N1 (6 + 2) | CS | PN | KKGNS | PKLSKS | TSTDQQSLYQNA | VNNKK | SSS | EPG | HYAGAN | RD | LLFKAS | D | D | PSIQSRGLF |
THA/NIAH587/2005 | eH1N1 (7 + 1) | CS | PN | KKGNS | PKLSKS | TNTDQQSLYQNA | VNNKK | GSS | EPG | PYAGAN | RG | LLFAIN | D | G | PSIQSRGLF |
THA/CU3795N/2013 | rH1N1 (6 + 2) | CS | PN | KKENS | PKISKS | TSNDQQSLYQNA | FNNKG | SSS | KPG | PYAGAN | RD | LLFNAS | D | D | PSIQSRGLF |
THA/CUSA43/2010 | rH1N1 (7 + 1) | pdm | PN | KKGNS | PKLSKS | TSADQQSLYQNA | INDKG | GSS | EPG | PHAGAK | RD | SLSTAS | D | D | PSIQSRGLF |
THA/CUS3629N/2012 | rH1N1 (pdm + 2) | CS | PN | KKENS | PKISKS | TSNDQQSLYQNA | FNNKG | SSS | KPG | PYAGAN | RD | LLFNAS | D | D | PSIQSRGLF |
This study | |||||||||||||||
THA/CU3759/2017 | rH1N1 (pdm + 2) | CS | PN | KKENS | PKLSKS | TSNDQQVLYQNA | FNNKG | SSS | KPE | PYAGAN | RN | SLFNAS | D | N | PSIQSRGLF |
THA/CU3764/2017 | rH1N1 (pdm + 2) | CS | PN | KKENS | PKLSKS | TSNDQQVLYQNA | FNNKG | SSS | KPE | PYAGAN | RD | SLFNAS | D | D | PSIQSRGLF |
THA/CU3770/2017 | rH1N1 (pdm + 2) | CS | PN | KKENS | PKLSKS | TSNDQQVLYQNA | FNNKG | SSS | KPE | PYAGAN | RD | SLFNAS | D | D | PSIQSRGLF |
THA/CU3793/2017 | rH1N1 (pdm + 2) | CS | PN | KKENS | PKLSKS | TSNDQQVLYQNA | FNNKG | SSS | KPE | PYAGAK | RD | SLFNAS | D | D | PSIQSRGLF |
THA/CU3802/2017 | rH1N1 (pdm + 1) | CS | PN | KKENS | PKLSKS | TSNDQQVLYQNA | FNNRG | SSS | KPE | PYAGAN | RD | LLFNAS | D | D | PSIQSRGLF |
THA/CU3798/2017 | rH1N1 (pdm + 1) | CS | PN | KKENS | PKLSKS | TSNDQQVLYQNA | FNNRG | SSS | KPE | PYAGAN | RD | LLFNAS | D | D | PSIQSRGLF |
THA/CU3803/2017 | rH1N1 (pdm + 1) | CS | PN | KKENS | PKLSKS | TSNDQQVLYQNA | FNNRG | SSS | KPE | PYAGAN | RD | LLFNAS | D | D | PSIQSRGLF |
THA/CU21299/2018 | rH1N1 (pdm + 1) | CS | PN | KKENS | PKLSKS | TSNDQQVLYQNA | FNNRG | SSS | KPE | PYAGAK | RD | LLFNAS | D | D | PSIQSRGLF |
THA/CU21304/2018 | rH1N1 (pdm + 1) | CS | PN | KKENS | PKLSKS | TSNDQQVLYQNA | FNNRG | SSS | KPE | PYAGAN | RD | LLFNAS | D | D | PSIQSRGLF |
THA/CU21626/2018 | rH1N1 (pdm + 1) | CS | PN | KKENS | PKLSKS | TSNEQQVLYQNA | FNNRG | SSS | KPE | PYAGAN | RD | LLFNAS | E | D | PSIQSRGLF |
THA/CU21970/2018 | rH1N1 (pdm + 1) | CS | PN | KKENS | PKLSKS | TSNDQQVLYQNA | FNNRG | SSS | KPE | PYAGAN | RD | LLFNAS | D | D | PSIQSRGLF |
THA/CU22117/2018 | rH1N1 (pdm + 1) | CS | PN | KKENS | PKLSKS | TSNDQQVLYQNA | FNNRG | SSS | KPE | PYAGAN | RD | LLFNAS | D | D | PSIQSRGLF |
THA/CU21630/2018 | rH1N1 (pdm + 1) | CS | PN | KKENS | PKLSKS | TSNDQQVLYQNA | FNNRG | SSS | KPE | PYAGAN | RG | LLFNAS | D | G | PSIQSRGLF |
THA/CU22300/2018 | rH1N1 (pdm + 1) | CS | PN | KKENS | PKLSKS | TSNDQQVLYQNA | FNNRG | SSS | KPE | PYAGAN | RN | LLFNAS | D | N | PSIQSRGLF |
THA/CU22351/2018 | rH1N1 (pdm + 1) | CS | PN | KKENS | PKLSKS | TSNDQQVLYQNA | FNNRG | SSS | KPE | PYAGAN | RD | LLFNAS | D | D | PSIQSRGLF |
THA/CU22630/2018 | rH1N1 (pdm + 1) | CS | PN | KKENS | PKLSKS | TSNDQQVLYQNA | FNNRG | SSS | KPE | PYAGAN | RG | LLFNAS | D | G | PSIQSRGLF |
THA/CU3732/2017 | rH1N1 (pdm + 1) | CS | PN | KKENS | PKLSKS | TSNDQQVLYQNA | FNNKG | SSS | KPE | PYAGAN | RG | SLFNAS | D | G | PSIQSRGLF |
THA/CU3743/2017 | rH1N1 (pdm + 1) | CS | PN | KKENS | PKLSKS | TSNDQQVLYQNA | FNNKG | SSS | KPE | PYAGAN | RD | SLFNAS | D | D | PSIQSRGLF |
