Table 2 Main features of “raw” transcriptomes (the original v4.0 as well the new Min2_Oases_Cap3 and Oases_k45) after functional and structural annotation.
Feature | v4.0 | Min2_Oases_Cap3 | Oases_k45 |
|---|---|---|---|
Transcripts | 697,125 | 153,847 | 87,362 |
Aggregate transcriptome length (nt) | 366,337,327 | 147,880,071 | 142,273,313 |
Longest transcript (nt) | 40,163 | 41,091 | 18,479 |
Indeterminations (%) | 0.45 | 0.67 | 0.44 |
Artefacts | 125,606 | 841 | 90 |
Misassembled | 300 | 123 | 10 |
Unmapped | 125,306 | 718 | 80 |
N50 (nt) | 1292 | 2051 | 2659 |
N90 (nt) | 180 | 360 | 825 |
Tentative transcripts (%) | 81.98 | 99.45 | 87.87 |
With orthologue | 69,525 | 31,110 | 23,757 |
Unique orthologue IDs | 37,607 | 22,948 | 14,374 |
Complete transcripts | 27,303 | 14,710 | 15,034 |
Unique complete transcripts | 15,402 | 11,219 | 7673 |
Putative ncRNA | 9811 | 3756 | 2500 |
Without orthologue | 492,182 | 118,140 | 50,515 |
Coding sequence | 57,619 | 24,999 | 17,529 |
Unknown nature | 434,563 | 93,141 | 32,986 |
