Table 5 Representative DETs between DEAB and TTNPB with respect to CTRL at 24 and 48 h after RNA-seq analysis.
Tentative | \({\hbox {Description}}^{a}\) | Gene | DEAB | TTNPB | ||
|---|---|---|---|---|---|---|
transcript ID | name | 24 h | 48 h | 24 h | 48 h | |
RA signalling | ||||||
SOLSEv5.0_49442 | Retinoic acid receptor \(\gamma\) B | rargb | NA | NA | NA | 1.73* |
SOLSEv5.0_14451 | Retinoic acid receptor \(\alpha\) A | raraa | \({-0.87}\) | 0.34 | \({-}1.81\)* | 0.88 |
SOLSEv5.0_08337 | Retinoic acid receptor RXR-\(\beta\)-A | rxrba | \({-}{1.11}\) | \({-}{0.31}\) | \({-}{1.46}\)* | \({-}{0.14}\) |
SOLSEv5.0_50356 | Cellular retinoic acid binding protein 1 | crabp1a | 1.11* | 0.01 | 1.28* | \({-}{0.59}\) |
SOLSEv5.0_16248 | Cellular retinoic acid-binding protein 2 | crabp2b | \({-0.30}\) | 0.05 | 1.33* | 1.00 |
SOLSEv5.0_31100 | Retinol binding protein 4 | rbp4 | \({-1.27}\)* | \({-0.13}\) | \({-1.17}\)* | 0.05 |
SOLSEv5.0_14047 | Diacylglycerol O-acyltransferase 1 | dgat1a | \({-1.42}\)* | \({-0.25}\) | \({-1.76}\)* | 0.34 |
SOLSEv5.0_12778 | Aldehyde oxidase 1 | aox1 | \({-1.30}\)* | 0.20 | \(-\)1.05* | 0.73 |
RA biosynthesis and degradation | ||||||
SOLSEv5.0_18848 | Lecithin retinol acyltransferase | lrata | NA | NA | 2.22* | 5.32* |
SOLSEv5.0_22413 | Lecithin retinol acyltransferase-like | lratb.1 | 1.10 | 0.05 | 2.78* | 3.58* |
SOLSEv5.0_15374 | Putative all-trans-retinol 13,14-reductase | retsat | \(-\)1.51 | \(-\)0.65 | \(-\)1.82* | \(-\)3.11 |
SOLSEv5.0_49456 | Retinol dehydrogenase 7 | rdh7 | \(-\)1.68* | \(-\)0.25 | \(-\)1.72* | 0.48 |
SOLSEv5.0_07671 | Dehydrogenase/reductase 3 | dhrs3b | \(-\)2.57* | \( - \)1.97 | 1.35* | 5.34* |
SOLSEv5.0_32529 | Aldehyde dehydrogenase 1 family member A2 | aldh1a2 | \(-\)1.07 | 0.75 | \(-\)1.92* | 1.21 |
SOLSEv5.0_28106 | \(\beta ,\beta\)-carotene 15,15’-dioxygenase-like | bco1 | \(-\)3.34* | \(-\)0.08 | \(-\)1.17 | 0.15 |
SOLSEv5.0_48894 | \(\beta ,\beta\)-carotene 9’,10’-oxygenase-like | bco2a | 1.32* | 0.12 | 0.57 | \(-\)0.43 |
SOLSEv5.0_10122 | \(\beta ,\beta\)-carotene 9’,10’-oxygenase-like | bco2l | \(-\)2.23* | \(-\)0.32 | \(-\)1.07* | 2.75* |
SOLSEv5.0_12130 | Cytochrome P450 26A1 | cyp26a1 | \(-\)0.91 | \(-\)0.54 | 4.56* | 7.75* |
SOLSEv5.0_16663 | Cytochrome P450 26B1 | cyp26b1 | \(-\)0.30 | 0.11 | 0.04 | 3.20* |
Thyroid axis | ||||||
SOLSEv5.0_10022 | Thyroglobulin | tg | \(-\)1.63 | \(-\)0.43 | \(-\)3.83* | 0.17 |
SOLSEv5.0_11284 | Thyroid hormone receptor \(\alpha\)-B | thrab | \(-\)0.74 | \(-\)0.04 | \(-\)1.71* | 0.53 |
SOLSEv5.0_00904 | Iodothyronine deiodinase 1 | dio1 | 1.37* | 0.91 | 0.62 | \(-\)0.04 |
Phototransduction signalling in retina | ||||||
SOLSEv5.0_08034 | Retinal-specific ATP-binding cassette transporter | abca4 | 2.25 | \(-\)0.05 | 2.10* | 0.05 |
SOLSEv5.0_03276 | RPE-retinal G protein-coupled receptor | rgr | 1.52* | 1.41* | 0.31 | \(-\)0.42 |
SOLSEv5.0_07779 | Retinal Mueller cells isomerohydrolase | rpe65b | 0.74 | \(-\)0.23 | 1.01* | 1.13* |
Pigmentation | ||||||
SOLSEv5.0_43495 | GTP cyclohydrolase 1 | gch1 | \(-\)0.49 | \(-\)0.71 | 0.44 | 1.28 |
SOLSEv5.0_16833 | Purine nucleoside phosphorylase 5 | pnp5a | \(-\)0.10 | 0.74 | \(-\)1.32* | 0.16 |
SOLSEv5.0_41612 | Cytosolic purine 5’-nucleotidase | nt5c2 | \(-\)0.77 | \(-\)0.53 | 1.08* | 1.88* |
SOLSEv5.0_19961 | G protein-coupled receptor 143 | gpr143 | 1.12 | NA | 1.33 | 0.58 |
Extracellular matrix | ||||||
SOLSEv5.0_17376 | Collagen \(\alpha\)-4(IV) chain | col4a4 | 0.76 | 0.07 | 1.08* | NA |
SOLSEv5.0_41972 | Collagen type IV \(\alpha\) 5 chain | col4a5 | \(-\)0.83 | 0.09 | \(-\)1.64* | NA |
SOLSEv5.0_10967 | Collagen type IV \(\alpha\) 6 chain | col4a6 | \(-\)1.29 | \(-\)0.02 | \(-\)1.85* | NA |
SOLSEv5.0_19543 | Collagen \(\alpha\)-2(V) chain | col5a2a | \(-\)1.32 | \(-\)0.06 | \(-\)1.82* | NA |
SOLSEv5.0_10008 | Collagen type V \(\alpha\) 3 chain | col5a3 | \(-\)0.43 | 0.57 | NA | 1.27* |
SOLSEv5.0_41833 | Collagen type XI \(\alpha\) 1 chain | col11a1b | \(-\)1.55* | 0.20 | \(-\)1.52* | NA |
SOLSEv5.0_41831 | Collagen type XI \(\alpha\) 1 chain | col11a1a | \(-\)1.28* | \(-\)0.31 | \(-\)1.20* | NA |
SOLSEv5.0_14185 | Collagen type XVI \(\alpha\) 1 chain | col16a1 | \(-\)1.48 | \(-\)0.19 | \(-\)1.04* | NA |
SOLSEv5.0_20615 | Collagen \(\alpha\)-1(XXI) chain | col21a1 | \(-\)0.88 | 0.31 | NA | 1.29* |
SOLSEv5.0_50025 | Collagen \(\alpha\)-1(XXVIII) chain | col28a2a | \(-\)0.53 | 0.83 | NA | 2.11* |
SOLSEv5.0_19261 | Osteocalcin 2 | bglap | \(-\)0.66 | \(-\)0.89 | NA | \(-\)2.20* |
SOLSEv5.0_49404 | Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 | plod2 | 0.01 | 0.16 | NA | 1.19* |
SOLSEv5.0_49653 | Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 | plod1a | \(-\)0.33 | 0.67 | NA | 1.98* |