Table 5 Diversity analysis of bushpigs MHC class II SLA-DQB1 exon-2 sequence.

From: Genetic origins and diversity of bushpigs from Madagascar (Potamochoerus larvatus, family Suidae)

 

nhap

nt

AA

V

mean

S.E

V

MEAN

S.E

All

38

43

0.048

0.008

28

0.117

0.023

Bushpigs

28

31

0.046

0.008

21

0.115

0.025

Madagascar

19

27

0.043

0.009

20

0.114

0.027

Ankarafantsika

14

19

0.038

0.009

16

0.101

0.025

Mahajanga Province (general)

–

      

Menabe Antimena

4

14

0.031

0.008

13

0.09

0.025

“East” Madagascar (Andasibe-Mantadia)

5

19

0.039

0.009

16

0.104

0.027

“North” Madagascar (Antsiranana Province)

–

      

Mainland Africa

11

28

0.046

0.009

18

0.098

0.024

Zimbabwe

7

26

0.042

0.008

18

0.093

0.022

KwaZulu-Natal, SA

1

      

Soutpansberg, SA

2

      

Tanzania

–

13

0.051

0.013

10

0.121

0.028

Africa

2

9

0.035

0.012

7

0.083

0.032

  1. Analysis was performed using the model T92 in MEGA 789. The Poisson model was used for amino acid analysis. The number of haplotypes (nhap) for each category is shown, including mean diversity (and standard error; S.E) and variable sites (V) for nucleotide (nt) and amino acid (AA) sequences.
Back to article page