Table 1 Summary of sequence data and mapping statistics of the rice genotypes used in this study.
From: Whole genome sequence analysis of rice genotypes with contrasting response to salinity stress
Total raw reads | Total filtered reads | Sequencing depth (fold) | Total mapped reads | Genome coverage (%) | Uniquely mapped reads | |
|---|---|---|---|---|---|---|
Pokkali | 68,001,168 | 63,188,954 (92.9%) | 14.7 | 62,376,939 (98.7%) | 92.7 | 45,061,913 (71.3%) |
Nona Bokra | 65,901,336 | 60,705,534 (92.1%) | 14.1 | 59,995,162 (98.8%) | 92.2 | 43,889,764 (72.3%) |
Cocodrie | 53,807,980 | 49,931,256 (97.5%) | 11.6 | 49,478,104 (99.1%) | 95.1 | 39,103,676 (78.3%) |
Bengal | 104,386,506 | 98,771,468 (94.6%) | 23.0 | 98,132,017 (99.4%) | 96.6 | 80,529,369 (81.5%) |
IR64 | 121,235,526 | 113,048,322 (93.3%) | 26.3 | 109,233,476 (96.6%) | 86.7 | 79,987,053 (70.8%) |
