Table 2 Large-effect single-nucleotide polymorphisms (SNPs) and InDels detected between salt tolerant genotypes (Pokkali and Nona Bokra) and salt sensitive genotypes (Bengal, Cocodrie, and IR64) as groups.
From: Whole genome sequence analysis of rice genotypes with contrasting response to salinity stress
Type of DNA polymorphism | SNPs | InDels |
|---|---|---|
Splice site acceptor | 14 | 0 |
Splice site donor | 10 | 0 |
Start lost | 4 | 0 |
Stop lost | 8 | 5 |
Stop gained | 49 | 0 |
Frameshift | 0 | 51 |
Total | 85 | 56 |
