Table 2 rsfG-dependent genes identified by RNA-seq analysis (FDR < 0.05). Volcano plot available in Supplementary Fig. S5
Gene ID | Product | ΔrsfG/WT (logFC) | pFDR |
|---|---|---|---|
STSU_03649 | Hypothetical protein | − 3.3 | 1.2E−02 |
STSU_03654 | Trypsin-like serine protease | − 5.6 | 2.3E−04 |
STSU_11545 | Hypothetical protein | 1.8 | 2.6E−02 |
STSU_11550 | Hypothetical protein | 4.3 | 3.0E−04 |
STSU_11560 | RNA polymerase factor sigma-70, SigG1 | 3.8 | 3.2E−03 |
STSU_12320 | Subtilisin-like serine protease | − 3.2 | 1.5E−02 |
STSU_16452 | Amino acid permease-associated protein | − 2.0 | 2.6E−02 |
STSU_16977 | Hypothetical protein | − 2.9 | 1.4E−02 |
STSU_16987 | Hypothetical protein | − 6.7 | 4.0E−05 |
STSU_19470 | Transpeptidase | − 2.1 | 2.5E−02 |
STSU_19475 | Hypothetical protein | − 4.9 | 2.9E−04 |
STSU_19480 | ECF subfamily protein RNA polymerase sigma-24 subunit | − 6.5 | 4.0E−05 |
STSU_25317 | Phospholipase | − 8.9 | 4.0E−05 |
STSU_25322 | Protein phosphatase | − 6.7 | 2.7E−04 |
STSU_25327 | Hypothetical protein | − 2.6 | 3.9E−03 |
STSU_31170 | ErfK/YbiS/YcfS/YnhG family protein | − 8.8 | 2.7E−04 |
STSU_31175 | Cytochrome P450 family protein | − 6.2 | 2.7E−04 |
STSU_32005 | Rifamycin polyketide synthase, FkbB | − 1.8 | 2.1E−02 |
