Table 1 High quality metagenome-assembled genomes from shotgun sequencing analysis.

Sample	Kit	Taxonomy	Completeness (%)^a	Contamination (%)^b
HM10_ML	ML	Corynebacterium pyruviciproducens	99.76	0.1
BMS12_ML	ML	Streptococcus mutans	99.63	0
HMS12_ML	ML	Enterococcus faecalis	99.63	0
HMS12_ML	ML	Deinococcus radiodurans	99.15	0.21
HMS12_ML	ML	Streptococcus mutans	98.88	0
BMS12_ML	ML	Deinococcus radiodurans	98.72	0.21
HM10_ML	ML	Enterococcus faecalis	98.5	0
BMS12_ML	ML	Bacillus cereus	98.3	0.33
BMS12_ML	ML	Rhodobacter sphaeroides	97.58	0.15
HMS12_ML	ML	Bacillus cereus	96.18	0.42
HMS12_ML	ML	Rhodobacter sphaeroides	92.05	0.25
HMS12_NEB	NEB	Deinococcus radiodurans	96.17	0.21
HMS12_NEB	NEB	Enterococcus faecalis	94.88	0.94
HMS12_NEB	NEB	Bacillus cereus	94.32	0.33
BMS12_NEB	NEB	Deinococcus radiodurans	90.92	0.21
HMS12_PS	PS	Bacillus cereus	97.99	0.33
HMS12_PS	PS	Streptococcus mutans	96.38	1.06
HMS12_PS	PS	Deinococcus radiodurans	95.96	0
BMS12_PS	PS	Deinococcus radiodurans	91.9	0.64

^aCompleteness: ratio of observed single-copy marker genes to total single-copy marker genes in the chosen marker gene set⁴⁶.
^bContamination: ratio of observed single-copy marker genes in ≥ 2 copies to total single-copy marker genes in the chosen marker gene set⁴⁶.

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