Table 2 Branch percent identities of phylogenies recovered using the presence/absence of ramp sequences or other genomic features compared to the OTL.
From: A comprehensive analysis of the phylogenetic signal in ramp sequences in 211 vertebrates
Branch percent identity compared to the OTL | ||
|---|---|---|
Mammalia | Non-mammalian vertebrates | |
Ramps—parsimony | 70 | 64 |
Ramps—maximum likelihood | 73 | 74 |
Codon aversion motifs | 77 | 66 |
Amino acid motifs | 63 | 56 |
Codon pairing | 90 | 77 |
Feature frequency profiles | 52 | 54 |
CVTree | 69 | 68 |
ACS | 90 | 76 |
Andi | 95 | 81 |
Filter-space word matches | 94 | 80 |
Maximum likelihood | 93 | 81 |
