Table 1 Variants with strong signatures of selection in coding genomic regions sorted by ihs scores from most negative (top) through least negative to most positive (bottom).
rsid | chr:pos | ref | alt | alt.AF | ihs | p-value (bh) | a.a change | gene |
|---|---|---|---|---|---|---|---|---|
rs10947368 | 6:32975341 | C | T | 0.1076 | − 6.422 | 5.73e−05 | K120N | HLA-DOA |
rs8192564 | 6:32191822 | G | A | 0.06011 | − 5.494 | 0.0024 | – | NOTCH4 |
rs115261305 | 6:32793668 | C | A | 0.1319 | − 5.385 | 0.0030 | – | TAP2 |
rs1126544 | 6:33037061 | G | C | 0.1281 | − 5.133 | 0.0085 | T121T | HLA-DPA1 |
rs3800326 | 6:28264717 | C | T | 0.1039 | − 5.111 | 0.0089 | P256L | PGBD1 |
rs61737338 | 6:28227217 | C | T | 0.08388 | − 4.922 | 0.0154 | S23F | NKAPL |
rs7943508 | 11:57003581 | C | T | 0.0657 | − 4.861 | 0.0176 | V300I | APLNR |
rs6582601 | 12:38716034 | C | T | 0.1253 | − 4.850 | 0.0183 | – | ALG10B |
rs2233954 | 6:31105672 | G | A | 0.08854 | − 4.802 | 0.0207 | – | PSORS1C2 |
rs34304311 | 6:28093263 | G | A | 0.07549 | − 4.657 | 0.0298 | L14L | ZSCAN16 |
rs6115256 | 20:25666642 | C | T | 0.1771 | − 4.600 | 0.0348 | L48L | ZNF337 |
rs17190762 | 6:31126992 | G | A | 0.06291 | − 4.528 | 0.0429 | – | TCF19 |
rs10896290 | 11:56128081 | A | G | 0.2679 | − 4.524 | 0.0429 | Y120C | OR8J1 |
rs61729683 | 6:32185818 | C | T | 0.06337 | − 4.522 | 0.0430 | A526A | NOTCH4 |
rs78133850 | 11:57004659 | G | A | 0.06897 | − 4.508 | 0.0442 | – | APLNR |
rs73468666 | 11:56958933 | G | A | 0.1761 | − 4.493 | 0.0462 | – | LRRC55 |
rs75301276 | 11:55944198 | C | T | 0.06058 | − 4.491 | 0.0462 | Y35Y | OR5J2 |
rs58567530 | 16:48172185 | C | A | 0.06943 | − 4.489 | 0.0464 | L311L | ABCC12 |
rs3013106 | 1:13802437 | G | A | 0.4455 | 4.995 | 0.0116 | S254S | LRRC38 |