Figure 3 | Scientific Reports

Figure 3

From: Genomic signatures of the evolution of defence against its natural enemies in the poisonous and medicinal plant Datura stramonium (Solanaceae)

Figure 3

(a) Venn diagram shows 7653 InterProscan domains that are shared between Datura stramonium Teotihuacán (Date), Solanum lycopersicum (Sly), Datura stramonium Ticumán (Dati) and Nicotiana attenuata (Natt). 15 and 17 domains are exclusive for D. stramonium Teotihuacán and Ticumán, respectively. The UpSet plot shows the intersections of the set of orthogroups from the thirteen Solanaceae genomes. Each column corresponds to an orthogroup, and each row corresponds to one segment in a Venn diagram. Cells are either empty (grey-black), indicating that this set is not part of that intersection, or filled, showing that the set is participating in the intersection and that the species share that orthogroup. OrthoFinder assigned 480,594 genes out of 536,483 (89.6% of total) to 35,458 orthogroups or gene families. Solanum pimpinellifolium and Solanum lycopersicum were the species-pair with more orthogroups shared (3140), followed by the pair between Datura stramonium Ticumán and Teotihuacán (2857 shared orthogroups).

Back to article page