Figure 3
From: Metagenomic characterisation of additional and novel avian viruses from Australian wild ducks
Phylogenetic analysis of the amino acid sequences of the sigma C protein of Pacific black duck orthoreovirus segment S1 (PBDORV/S1/PBD08.18). The amino acid sequences were aligned and analysed by using the maximum likelihood method based on the WAG + G + F model73 in MEGACC74 with a bootstrapping of 1000 replicates. The analysis involved 18 amino acid sequences and all positions containing gaps and missing data were eliminated. The final dataset contained a total of 257 amino acid positions. The numbers at the nodes represent bootstrap values and only bootstrap values at or above 60% are shown. Pacific black orthoreovirus is shown in blue and marked with a black triangle. No orthologous sigma C protein was found in Broome ORV, Baboon ORV and Mahlapitsi ORV.
