Table 3 Details on the rotavirus G from Pacific black duck 08.18 sample (PBDRVG/PBD08.18).
From: Metagenomic characterisation of additional and novel avian viruses from Australian wild ducks
Segment|protein encoded | Length of the generated nucleotide sequence (nt) | Protein function | Percentage identity to its closest relative using MEGA | |
|---|---|---|---|---|
Amino acid | Nucleotide | |||
S1|partial VP1 | 3479 | MK204401.1 Grey teal RVG5 with 98.6% identity | MK204401.1 Grey teal RVG5 with 92.6% identity | |
S2|partial VP2 | 2832 | Part of the inner layer of the capsid and is associated with the RNA polymerase and the VP318 | MK204402.1 Grey teal RVG VP25 with 98.5% identity | MK204402.1 Grey teal RVG5 with 79.8% identity |
S3|partial VP4 | 2322 | Part of the outer capsid18 | KY689679.1 Turkey RVG17 with 54.3% identity | KY689679.1 Turkey RVG17 with 60.3% identity |
S4|partial VP3 | 2277 | A multifunctional protein which may be associated with guanylyltransferase79 | MK204403.1 Grey teal RVG5 with 98.2% identity | MK204403.1 Grey teal RVG5 with 95.1% identity |
S5|partial NSP1-1 and complete NSP1 | 1198 | NSP-1 protein: MK204405.1 Grey teal RVG5 with 98.0% identity | MK204405.1 Grey teal RVG5 with 96.6% identity | |
S6|VP6 | 1272 | Part of the intermediate layer of the capsid44 | MK204406.1 Grey teal RVG5 with 87.2% identity | MK204406.1 Grey teal RVG5 with 73.8% identity |
S7|NSP3 | 1276 | Regulates the virus mRNA translation18 | MK204407.1 Grey teal RVG partial NSP3 protein5 with 88.1% identity; KY689682.1 Turkey RVG17 with 60.4% identity | MK204407.1 Grey teal RVG partial S75 with 89.1% identity; KY689682.1 Turkey RVG17 with 70.4% identity |
S8|NSP2 | 997 | Aids in the virus particle assembly82 | MK204408.1 Grey teal RVG5 with 99.6% identity | MK204408.1 Grey teal RVG5 with 97.8% identity |
S9|partial VP7 | 745 | Part of the outer capsid18 | MT025062.1 Gentoo penguin RVG with 66.7% identity and MK204409.1 Grey teal RVG with 66.4% identity | MT025062.1 Gentoo penguin RVG with 58.6% identity and MK204409.1 Grey teal RVG with 56.5% identity |
S10|partial NSP4 | 772 | Acts as viral enterotoxin83 | MH453872.1 Ruddy turnstone RVG19 with 53.7% identity | MH453872.1 Ruddy turnstone RVG19 with 67.8% identity |
S11|NSP5 | 613 | Aids in the virus particle assembly82 | MK204410.1 Grey teal RVG NSP55 with 92.9% identity | MK204410.1 Grey teal RVG5 with 80.0% identity |
