Table 2 Summary of statistics for individual RNA-Seq paired-end reads and library.
Biological assay | Library name | No of paired-end reads | No of paired-end reads after quality and trimming | % paired-end reads mapped to Meloidogyne_javanica transcriptome (%) |
|---|---|---|---|---|
(1) | Protoplasts | 21,228,091 | 13,070,602 | 73.42 |
(2) | Protoplasts | 21,776,598 | 18,074,731 | 60.81 |
(1) | 9-HOT | 20,313,528 | 14,682,317 | 53.40 |
(2) | 9-HOT | 21,446,366 | 14,672,689 | 52.17 |
(1) | MES buffer + Ethanol | 23,253,618 | 16,242,352 | 74.07 |
(2) | MES buffer + Ethanol | 21,049,270 | 14,001,192 | 71.96 |
(1) | J2 | 19,814,441 | 14,227,256 | 72.44 |
(2) | J2 | 21,904,546 | 16,190,321 | 71.59 |
