Figure 3
From: Phylogenomics of the Hyalella amphipod species-flock of the Andean Altiplano
(a) Nuclear phylogeny based on the single-copy nuclear genes supermatrix. Node numbers above and below main branches indicate gCF and sFC support values respectively as the proportion of genes (gCF) and sites (sFC) that are concordant with any particular branch in the supermatrix. Code color for ML bootstrap support and stars as in Fig. 2. (b) Species tree based on multispecies coalescent model (MSC) using data of the 76 single-copy nuclear gene-fragments. (c) MSC tree based on single-copy nuclear gene-fragments plus the 13 mitochondrial protein-coding genes as an extra “gene”. For both (b,c) the terminals were classified into species following results by Jurado-Rivera et al.15, letters and numbers on tips refer to Molecular Taxonomic Operational Units. Trees are available in nexus format in the GitHub repository (https://github.com/Frazapel/Hyalella-amphipod-Phylogenomics). Code colour for nodal Bayesian posterior probability values in b) and c) as in Fig. 2.
