Table 1 Summary of the dataset.
Sample | Location | Type | Instrument | Clean reads | Clean bases | %GC | > Q20 | > Q30 |
|---|---|---|---|---|---|---|---|---|
A | China | PE100 | BGISEQ-500 | 607,199,826 | 91,079,114,100 | 41 | 96.14 | 90.71 |
A | South Africa | PE100 | MGISEQ-2000 | 607,871,944 | 91,079,892,900 | 41 | 96.44 | 91.47 |
B | South Africa | PE100 | MGISEQ-2000 | 606,752,354 | 90,746,832,900 | 40 | 96.97 | 90.01 |
C | South Africa | PE100 | MGISEQ-2000 | 608,824,594 | 91,180,791,600 | 41 | 97.01 | 92.55 |
D | South Africa | PE100 | MGISEQ-2000 | 606,900,390 | 90,205,943,600 | 41 | 97.41 | 90.59 |
E | South Africa | PE100 | MGISEQ-2000 | 608,317,592 | 90,770,106,600 | 41 | 95.67 | 90.97 |
F | South Africa | PE100 | MGISEQ-2000 | 608,653,994 | 90,899,675,100 | 41 | 97.15 | 90.48 |
