Table 2 Relative abundance of cervicovaginal microbiota over time.
First collection | Second collection; After surgery | Second collection; Observation 2 | Total | |
|---|---|---|---|---|
N = 41 | N = 28 | N = 13 | N = 82 | |
Phylum | ||||
Firmicutes | 65.1% | 64.1% | 69.0% | 65.5% |
Actinobacteria | 19.9% | 27.8% | 24.1% | 23.7% |
Bacteroidetes | 8.6% | 5.6% | 4.2% | 6.6% |
Fusobacteria | 2.5% | 1.9% | 1.9% | 2.2% |
Class | ||||
Bacilli | 55.6% | 55.3% | 66.3% | 57.7% |
Actinobacteria | 15.3% | 24.8% | 9.6% | 17.7% |
Clostridia | 9.4% | 8.7% | 2.7% | 7.8% |
Bacteroidia | 8.6% | 5.5% | 4.2% | 6.6% |
Order | ||||
Lactobacillales | 55.1% | 55.3% | 66.1% | 57.4% |
Bifidobacteriales | 14.2% | 24.8% | 9.6% | 17.2% |
Clostridiales | 9.4% | 8.7% | 2.7% | 7.8% |
Bacteroidales | 8.6% | 5.5% | 4.2% | 6.6% |
Family | ||||
Lactobacillaceae | 54.0% | 53.4% | 65.5% | 56.1% |
Bifidobacteriaceae | 14.2% | 24.8% | 9.6% | 17.2% |
Coriobacteriaceae | 4.6% | 3.0% | 14.5% | 6.0% |
Prevotellaceae | 4.2% | 5.5% | 4.0% | 4.6% |
Genus | ||||
Lactobacillus | 46.8% | 63.5% | 57.5% | 56.1% |
Gardnerella | 13.4% | 10.1% | 10.0% | 11.3% |
Bifidobacterium | 5.3% | 2.2% | 12.7% | 5.9% |
Atopobium | 5.9% | 2.8% | 9.7% | 5.6% |
Prevotella | 4.9% | 5.4% | 2.9% | 4.6% |
Total reads | 1,262,450 | 1,104,078 | 601,747 | 2,968,275 |
Average number of reads/specimen | 30,791.5 | 39,431.4 | 46,288.2 | 36,198.5 |
Average OUT/specimen | 19.3 | 17.3 | 20 | 18.7 |
