Table 4 Comparisons of the proposed method with the latest methods.

From: A deep learning framework combined with word embedding to identify DNA replication origins

Species

Method

Acc

Sp

Sn

MCC

AUC

S. cerevisiae (\(S_{1}\))

iRO-3wPseKNC35

0.730

0.752

0.707

0.459

0.808

iRO-PseKGCC36

0.764

0.781

0.739

0.530

0.813

iORI-PseKNC2.028

0.782

0.802

0.763

0.565

0.831

XGBoosting based method32

0.895

0.938

0.852

0.793

The proposed method

0.975

0.966

0.983

0.940

0.975

S. pombe (\(S_{2}\))

iRO-3wPseKNC35

0.965

0.949

0.979

0.929

0.986

The proposed method

0.765

0.780

0.750

0.530

0.800

K. lactis (\(S_{3}\))

iRO-3wPseKNC35

0.851

0.845

0.858

0.703

0.901

The proposed method

0.885

0.912

0.858

0.771

0.888

P. pastoris (\(S_{4}\))

iRO-3wPseKNC35

0.710

0.723

0.699

0.422

0.796

iRO-PseKGCC36

0.742

0.739

0.745

0.484

0.800

The proposed method

0.967

0.974

0.960

0.934

0.981