Table 2 Differentially expressed lncRNAs and relative mRNAs.

From: Bioinformatic identification of genomic instability-associated lncRNAs signatures for improving the clinical outcome of cervical cancer by a prognostic model

LncRNA

logFC

p value

Fdr

Relative mRNA

Up-regulated

KCNMB2-AS1

1.633484

9.22E−05

0.018886

BOLA2B, LAMTOR4, UQCC3, BCL7C, FAAP20, NUDT1, IZUMO4, POLR2J, NCBP2AS2, COPS9, ELOB, NT5C, SMUG1, MRPL47, TNNC2

AC093895.2

1.544702

4.76E−05

0.014907

LPAR6, HEBP2, ARL11, C12orf54, CRABP2, HSPB1, NRN1, XCL1, SLC44A5, SP140L, KRT15, TXNDC17, PERM1, C1orf21, CLEC2A

AL162413.1

2.309286

0.001041

0.047346

KCNQ4, APRT, EXOSC4, CITED4, DPM2, PTGES2, RPL36, BOP1, RPL13, NDUFAF8, CCDC167, MRPL27, MRPL14, RPL8, MVD

FIRRE

0.974686

0.000931

0.046215

PAPOLG, TFAP4, KMT5A, KCTD15, KANSL2, KDM3A, METTL8, DKC1, TAF4B, ZC3H8, VANGL2, C21orf91, EFS, METAP1, FANCE

LINC00944

1.795497

0.000303

0.028837

SLC25A22, IL2RG, RELB, GNGT2, ICOS, IL21R, MARCO, FAM24B, APOBEC3G, APOBEC3H, CTLA4, CXCL10, VCAM1, CLIC2, CD2

AC005993.1

1.09773

0.000443

0.037799

TESMIN, ALPG, IGF1R, CCNA1, DDX17, CCDC3, ANO1, PREX1, DGKZ, KMT5B, SERHL2, TMEM184B, BRMS1L, MBIP, DNAL4

LINC02542

1.075473

0.000305

0.028837

A1CF, XYLB, GGCX, AGMAT, ACOX2, SLC25A13, ACADSB, SERPIND1, PLG, ITIH1, SLC6A1, AGMO, SLCO1B1, SNTB1, HNF4A

LINC00649

0.909561

1.81E−05

0.007423

IFI16, SNX30, N4BP1, GJB5, RARG, KCTD1, NECTIN1, MAP3K6, TRIM29, GM2A, KLF8, TRERF1, DEF6, NECTIN4, LRRC1

AL023803.2

0.553819

0.000561

0.037799

PAX9, CALB2, CCNO, FAM83D, MCIDAS, ITGA2B, UBE2C, LIN7B, FOXA1, PCED1A, AC011479.2, TFAP2C, MXD3, ACTR5, KMT5C

Down-regulated

MAN1B1-DT

 − 0.56543

0.000984

0.047346

EXOSC6, HIRIP3, DDX28, MDP1, CHAF1B, THAP11, TTC32, C4orf36, TLX2, C9orf78, CTF1, CFDP1, EXOSC2, PIGW, UTP4

AC025580.1

 − 1.87066

0.000609

0.038385

TCTE3, SCIN, ZG16B, GFPT1, ZNF585B, FGFBP3, TTC39A, SLC44A4, ZNF345, MYO6, PDXDC1, ZFP14, ZNF529, ARFGEF3, ZNF518A

TRAM2-AS1

 − 0.43872

0.000128

0.02102

ALDH5A1, BPHL, SIRT5, TPMT, KLC4, CAP2, ACOT13, MMUT, MOCS1, DHTKD1, HIBADH, YIPF3, SLC17A4, FAM8A1, EHHADH

RARA-AS1

 − 0.35817

0.000119

0.02102

FKBP2, RARA, KRT18, TMEM205, RPS27L, NTHL1, G3BP1, REPS2, FUCA1, CEBPB, BLOC1S1, FAM167B, RAB17, COX14, CD63

LINC01836

 − 0.99887

0.000317

0.028837

TMC4, MSLN, WWC1, MISP, RAB20, TMPRSS3, LAMA5, ALDH3B1, TSPAN15, DOCK5, RBMS2, CRIM1, IQCE, PIWIL4, CCL28

SERTAD4-AS1

 − 0.88678

6.68E−06

0.005235

SERTAD4, DOK7, TMEM125, SIX1, CRIP2, HOXB6, HOXB5, CCDC160, MRAP2, TSPAN3, SLFN13, CRIP1, COL9A2, IFT172, SCX

AC132938.4

 − 0.6378

7.33E−05

0.017157

PNPO, PIGV, CPT2, HLF, PDK2, TOM1L1, PCTP, SLC38A10, FBXO31, ACOX1, MTMR4, UGT1A3, SCP2, ZMYND12, CRYZ

AC107464.2

 − 0.75617

0.001019

0.047346

PDE6B, UCP2, PRAF2, FUZ, DTX3, ZNF232, DOK1, AC005041.1, COL9A2, NAT14, CRIP1, UBXN11, C2orf15, C11orf49, CLUAP1

MIR100HG

 − 0.8595

0.000184

0.025064

SPRY2, SPRY1, DLG4, KIF26B, MFGE8, ZNF853, FGF18, SPRY4, MFAP4, EFEMP2, REV3L, ETV5, VCAN, KCNH3, LRIG1

AC083964.1

 − 0.47203

0.000799

0.042653

TDRP, CCDC28B, FABP6, MARCO, NPPC, KREMEN2, TNNI2, IL11RA, COL16A1, LIFR, FAM71E1, PARM1, CD200, TRAF2, SOCS1

IRAIN

 − 0.1848

0.000699

0.042435

TESMIN, IGF1R, ALPG, CCNA1, CCDC3, ANO1, CSPG5, PREX1, TMEM184B, SLC39A8, RGS10, DNAL4, KMT5B, RNF32, DDX17

AP001527.2

 − 1.66464

0.000317

0.028837

YAP1, BIRC2, CEP126, TMEM123, CFAP300, SYDE1, SLC1A6, DYNC2H1, DCUN1D5, FADS3, BIRC3, IKBIP, HMGB3, ELOVL3, GPAT2

BMPR1B-DT

 − 2.95927

0.000575

0.037799

BMPR1B, SOX17, FBLN1, PAK1IP1, FAM189A2, MAP2K6, HOXA10, TUBA3D, RBBP7, AADAT, LHX2, ELP3, ASRGL1, IGF1, ALKAL2

AC096733.3

 − 0.41954

0.000561

0.037799

TBC1D9, WDFY3, HELQ, USP53, ELF2, SMARCAD1, NEK1, KIAA1109, THUMPD1, SETD1B, KDM6A, KIDINS220, DNAJB14, ARID2, EIF2AK3

AC097359.2

 − 0.38644

0.000777

0.042653

TCTA, SLC25A20, QPRT, TK2, FN3K, ABHD6, CMTM8, MYRIP, SLC26A1, ALDH4A1, CPN2, SYPL2, HNF1A, IQSEC1, OAF

ADCY6-DT

 − 0.96724

0.000577

0.037799

JSRP1, PLA2G10, SMIM22, TRIM54, GCNT3, ASPHD1, PDE4C, METTL27, TNNC2, PRR13, RNASEH2C, PGP, RASSF7, ELOB, TMEM238

IQCH-AS1

 − 0.40448

0.000238

0.027863

NEK8, NEIL1, C2orf15, COA5, DIS3L, P4HTM, SNAPC5, ZNF33B, BBS4, MYO5C, LZTS3, FAM81A, ARPIN, LRTOMT, CCDC57

AC129510.1

 − 0.47954

0.000522

0.037799

CCDC14, AHI1, WDR90, NKTR, PHF12, PNISR, CFAP44, SREK1, MSANTD2, EFHC1, KIF27, VEZF1, PASK, DNAL1, KIAA0753

LINC02875

 − 0.69396

0.000465

0.037799

PIGP, RAB6B, SOX2, C6orf226, CDKAL1, TNRC6C, TBX2, TMEM251, CHAF1B, CHST7, ADRA2B, TP53I13, BFSP1, CD200, THAP7

LOXL1-AS1

 − 0.59163

9.59E−06

0.005235

LOXL1, ADPGK, CHSY1, LARP6, SLC35E4, RCN2, THAP10, KIAA0753, NCBP3, VCL, CHD3, DTX3, PTPN9, CNTROB, MYO9A

FGF14-AS2

 − 1.20708

3.01E−06

0.004925

CMBL, ACAA2, TMEM205, BTD, CYP2B6, ZG16, CYP2A6, CYB5A, SERPINA4, HAO1, ACBD4, CLYBL, SLC10A1, CYP2A13, PCK2

AL391422.4

 − 0.56864

0.000766

0.042653

PXDC1, TMEM14C, SAA2, CUTA, YIPF3, TRIM27, RNF5, C6orf89, MOCS1, SAA1, NMT2, SLC39A7, SIRT5, C9, MRPL2

AC025265.1

 − 0.56836

5.46E−05

0.014907

NT5DC3, MTERF2, OVGP1, GOLGA8B, RPL9, SLC25A16, KLHL23, NR2C1, NSUN6, MPST, CENPV, C12orf73, ZNF577, ABCA5, CHKA

ATP1A1-AS1

 − 0.42986

0.000822

0.042653

ABCD3, PRKAA2, NBR1, TOM1L1, CNNM3, C16orf58, C1orf56, SPATA25, DDAH1, USP30, CRYZ, ST3GAL3, PARD3B, REPIN1, COX11

EIF3J-DT

 − 0.40662

0.000201

0.025372

C2orf15, ZBTB26, VPS39, ZNF512, POLR2M, ETAA1, ZBTB14, HNRNPA1L2, ZNF33B, ICE2, MKS1, ZNF248, KAT8, INTS14, CTDSPL2

AC114956.2

 − 0.51268

0.000145

0.021664

C5orf34, NIPBL, ZNF131, RAD1, DROSHA, C5orf51, RICTOR, C5orf22, NUP155, TMEM267, DNAJC21, CPLANE1, ICE1, MARCHF6, PAIP1

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