Table 2 Cell lines in which a different species from institution records was identified.
From: High-throughput sequencing for species authentication and contamination detection of 63 cell lines
Cell line | Species | cDNA run | Total reads | Number of reads mapped to COX1/CytB | Breadth of coverage of COX1/CytB (%) | Mean depth of coverage of COX1/CytB | Total variants | Reference mitogenome accession |
|---|---|---|---|---|---|---|---|---|
LFBK-αVβ6 | Sus scrofa | 2 | 4,351,208 | 880 | 100.0 | 91.0 | 0 | JN601075.1 |
Bos taurus | 77 | 44.1 | 8.2 | 98 | MN200869.1 | |||
SCP-HS | Bos taurus | 2 | 511,706 | 202 | 100.0 | 23.7 | 0 | MF663794.1 |
Ovis aries | 85 | 100.0 | 11.1 | 176 | KU681212.1 | |||
Same genus | ||||||||
BGMK | Chlorocebus pygerythrus | 2 | 896,826 | 501 | 100.0 | 50.4 | 6 | EF597501.1 |
320 | 100.0 | 40.1 | 5 | JX983774.1 | ||||
Chlorocebus aethiops | 484 | 100.0 | 48.8 | 47 | MN816163.1 | |||
287 | 100.0 | 36.8 | 47 | |||||
CGBQ | Anser cygnoides | 2 | 2,426,176 | 10,021 | 100.0 | 1,179.6 | 0 | MN356388.1 |
3363 | 100.0 | 536.1 | 0 | MK102803.1 | ||||
Anser anser | 10,010 | 100.0 | 1,178.4 | 9 | MN122908.1 | |||
3352 | 99.9 | 534.7 | 19 | |||||
MA-104 | Chlorocebus pygerythrus | 2 | 947,256 | 165 | 100.0 | 14.6 | 0 | MT481926.1 |
127 | 100.0 | 13.5 | 0 | |||||
Chlorocebus aethiops | 149 | 100.0 | 13.2 | 55 | MN816163.1 | |||
96 | 100.0 | 9.7 | 49 | |||||
PaLu | Pteropus ornatus | 2 | 1,030,394 | 197 | 100.0 | 17.2 | 39 | NC_046926.1 |
97 | 100.0 | 10.1 | 41 | |||||
Pteropus alecto | 192 | 100.0 | 16.9 | 49 | KF726143.1 | |||
96 | 100.0 | 10.4 | 37 | |||||
PaSPT | Pteropus ornatus | 2 | 936,338 | 195 | 100.0 | 25.7 | 40 | NC_046926.1 |
93 | 100.0 | 12.7 | 38 | |||||
Pteropus alecto | 194 | 100.0 | 25.6 | 50 | KF726143.1 | |||
91 | 100.0 | 12.4 | 37 | |||||
Vero | Chlorocebus sabeus | 2 | 461,114 | 311 | 100.0 | 25.1 | 3 | JQ256913.1 |
223 | 100.0 | 23.3 | 2 | EF597503.1 | ||||
Chlorocebus aethiops | 285 | 100.0 | 23.4 | 67 | MN816163.1 | |||
161 | 99.1 | 17.9 | 67 | |||||
Vero Nectin-4 | Chlorocebus sabeus | 2 | 633,176 | 238 | 100.0 | 28.0 | 3 | JQ256913.1 |
294 | 100.0 | 40.2 | 2 | EF597503.1 | ||||
Chlorocebus aethiops | 207 | 100.0 | 26.2 | 65 | MN816163.1 | |||
223 | 100.0 | 33.5 | 70 | |||||
Vero-76 | Chlorocebus sabeus | 1 | 1,284,012 | 618 | 100.0 | 50.3 | 3 | EF597503.1 |
598 | 100.0 | 64.8 | 2 | EF597503.1 | ||||
Chlorocebus aethiops | 583 | 100.0 | 47.4 | 67 | MN816163.1 | |||
534 | 100.0 | 59.5 | 70 | |||||
