Table 2 SNP and InDels between QI0054 and QI0055 detected by snippy (v.4.2.1).
Position | Type | Ref | Alt | Evidence | Nt | AA | Effect | Locus tag (LR999861/NP_463670) | Product |
|---|---|---|---|---|---|---|---|---|---|
228,590 | snp | C | G | G:53 C:0 | 707/3303 | 236/1100 | Missense variant c.707C>G p.Ala236Gly | QI0054_263/lmo0182 | Glycosyl hydrolase, family 31 |
249,573 | snp | C | T | T:67 C:0 | 385/714 | 129/237 | Missense variant c.385G>A p.Ala129Thr | QI0054_281/lmo0200 | Virulence regulatory factor PrfA |
1,639,252 | del | ACTTG | A | A:64 ACTTG:0 | 2044/2217 | 681/738 | Frameshift variant c.2041_2044delCAAG p.Gln681fs | QI0054_1707/lmo1523 | Guanosine-3′,5′-bis(diphosphate) 3′-pyrophosphohydrolase (EC/GTP pyrophosphokinase (EC, (p)ppGpp synthetase II |
1,665,380 | snp | G | A | A:106 G:0 | 343/1014 | 115/337 | Missense variant c.343C>T p.Arg115Cys | QI0054_1732/lmo01548 | Rod shape-determining protein MreB |
2,293,239 | del | AT | A | A:28 AT:0 | 221/2262 | 74/753 | Frameshift variant c.221delA p.Asn74fs | QI0054_2308/lmo2121 | Maltose phosphorylase |
2,773,205 | del | CA | C | C:55 CA:1 | 177/213 | 59/70 | Frameshift variant c.177delT p.Phe59fs | QI0054_2785 | FIG00774055: hypothetical protein |
