Table 1 Enriched KEGG pathways for DEGs between anagen and telogen.

From: Identification of potential key genes and pathways associated with the Pashmina fiber initiation using RNA-Seq and integrated bioinformatics analysis

Pathways

FDR corrected P-value

Percentage enrichment

Genes

Cytokine-cytokine receptor interaction

1.10E−11

14.24149

CCL2, TNFSF12, LIF, CD40LG, IL10RA, TNFSF14, IL1F10, IL36RN, CD4, CCR2, CCR4, CCR7, IL1A, TNFSF13B, CSF2RB, CCL5, CSF1R, CCR10, THPO, CXCR3, INHBB, OSM, CXCR6, CCL14, IFNE, IL36G, TNFSF4, TGFB1, IL5RA, ACVRL1, IL2RB, IL7R, CD40, LTB, LTA, FASLG, TNFRSF1B, EPOR, IL2RA, BMP5, CXCL5, ACKR4, CCL19, IL21R, CLCF1, TNFRSF6B

PI3K-Akt signaling pathway

3.24E−07

10.72386

PCK2, ITGA9, COL4A1, PDGFRB, CSF1R, LAMA2, ITGA5, ITGA11, LAMB2, FLT1, THBS4, THBS2, PIK3CG, PIK3R5, OSM, JAK3, FGF16, ANGPT4, IGF2, IGF1R, NOS3, ITGB7, IL7R, FASLG, COL4A2, TNC, LAMC3, KITLG, COL6A3, EPOR, IL2RA, IL2RB, FN1, ITGAV, F2R, EREG, CREB3L4, VWF, COL6A2, LPAR6

ECM-receptor interaction

7.52E−07

20.68966

COL4A1, ITGA9, LAMA2, COL6A2, FN1, ITGB7, THBS4, HSPG2, THBS2, ITGA5, ITGAV, ITGA11, COL4A2, TNC, LAMC3, VWF, LAMB2, COL6A3

Cell adhesion molecules (CAMs)

9.32E−07

15.09434

ITGA9, CDH15, CLDN15, NRCAM, CD34, CD4, CD226, CD2, L1CAM, CD40LG, CD86, ICAM1, ITGAL, CDH5, CDH4, CLDN7, ITGB2, ITGB7, CD40, CD8A, ITGAV, PTPRC, ITGAM, ESAM

Neuroactive ligand-receptor interaction

6.92E−06

9.917355

PTH1R, CCK, GABRR2, CHRNA10, C5AR1, ADCYAP1, P2RX1, UTS2R, GPR35, MC4R, ADORA2B, CNR2, ADRB1, TAC1, RXFP2, P2RY10, ADRA2A, PTGER3, GAL, HRH2, C3, VIPR2, GRM2, TBXA2R, GRID2, OXT, PMCH, F2RL3, S1PR4, APLNR, C3AR1, DRD5, NPB, F2R, HCRTR1, LPAR6

Focal adhesion

8.17E−06

12.62626

ITGA9, COL4A1, PDGFRB, LAMA2, ITGA11, LAMB2, FLT1, THBS4, THBS2, PARVB, PARVG, IGF1R, RAC2, ITGB7, SHC3, ITGA5, COL4A2, TNC, LAMC3, VWF, FN1, VAV1, ITGAV, COL6A3, COL6A2

NF-kappa B signaling pathway

1.86E−05

16.66667

CD40LG, TIRAP, CD14, CCL19, CARD11, TNFSF14, CD40, LTB, LTA, ZAP70, ICAM1, PRKCQ, RELB, LYN, LAT, BTK, TNFSF13B

Rap1 signaling pathway

3.10E−05

11.57407

RASGRP2, PDGFRB, APBB1IP, PLCB2, GNAI2, FLT1, ADORA2B, ARAP3, RAP1GAP, CSF1R, SIPA1, FGF16, ANGPT4, IGF1R, ITGB2, RAC2, LAT, LCP2, KITLG, ADCY4, VAV1, F2R, ITGAL, ITGAM, F2RL3

cAMP signaling pathway

0.000169188

10.52632

NFATC1, ADCYAP1, ATP2A3, ADCY10, RAC2, GNAI2, ARAP3, ADRB1, CNGB3, CAMK4, PTGER3, VIPR2, NPR1, LIPE, OXT, CNGA3, PDE10A, ADCY4, VAV1, DRD5, F2R, CREB3L4, PDE4A, CFTR

MAPK signaling pathway

0.00685971

7.876712

RASGRP2, NFATC1, RASGRP4, PDGFRB, TGFB1, IL1A, FLT1, CACNA1H, CSF1R, DUSP9, RELB, FGF16, ANGPT4, IGF2, IGF1R, RAC2, STK3, FASLG, KITLG, PTPN7, RPS6KA2, CD14, EREG

Calcium signaling pathway

0.006925474

8.866995

ORAI2, TBXA2R, ADORA2B, NOS3, F2R, PLCB2, ADCY4, DRD5, CAMK4, PDGFRB, PTGER3, ITPKA, ADRB1, GNA14, HRH2, CACNA1H, P2RX1, ATP2A3

Ras signaling pathway

0.0081218

8.264463

IGF2, RASGRP2, IGF1R, RAC2, RASGRP4, SHC3, PLA2G12B, CSF1R, FGF16, PLA2G2E, ZAP70, PLA2G2F, LAT, FASLG, KITLG, RASA3, PDGFRB, RASAL3, ANGPT4, FLT1

Protein digestion and absorption

0.01083711

10.61947

COL15A1, SLC9A3, KCNQ1, COL5A3, KCNN4, COL13A1, COL4A2, COL4A1, COL24A1, COL6A3, COL6A2, SLC1A1

Arachidonic acid metabolism

0.011034945

12.04819

PTGS1, TBXAS1, PLA2G12B, ALOX5, EPHX2, PTGIS, ALOX15, PLA2G2E, PLA2G2F, PTGES

Melanogenesis

0.014067417

10.78431

WNT2B, ADCY4, PLCB2, CREB3L4, WNT3, WNT2, WNT9A, FZD9, WNT5B, KITLG, GNAI2

Hippo signaling pathway

0.014200591

9.271523

WNT2B, TGFB1, BMP5, ITGB2, WNT3, WNT2, STK3, WNT9A, FZD9, DLG2, WNT5B, WTIP, SERPINE1, CTNNA3

cGMP-PKG signaling pathway

0.014896486

8.87574

ADCY4, NFATC1, PLCB2, NOS3, NFATC4, NPR1, ATP2A3, KCNJ8, ADRA2A, PIK3CG, ADRB1, PIK3R5, CREB3L4, PDE2A, GNAI2

Phospholipase D signaling pathway

0.014927328

9.210526

ADCY4, PDGFRB, FCER1G, FCER1A, SHC3, MS4A2, PLCB2, PIK3CG, F2R, PIK3R5, KITLG, LPAR6, CYTH4, GRM2

Wnt signaling pathway

0.021435141

8.695652

WNT2B, NFATC1, PLCB2, NFATC4, RSPO4, WNT3, WNT2, LGR5, SOX17, RSPO2, WNT9A, FZD9, WNT5B, RAC2

Jak-STAT signaling pathway

0.025691752

7.920792

IL7R, IL2RA, IL2RB, STAT4, SOCS1, IL10RA, PDGFRB, IFNE, IL21R, IL5RA, THPO, LIF, OSM, JAK3, CSF2RB, EPOR

Signaling pathways regulating pluripotency of stem cells

0.035422505

8.633094

WNT2B, LIF, PCGF6, WNT3, WNT2, IGF1R, INHBB, DUSP9, JAK3, WNT9A, FZD9, WNT5B

Purine metabolism

0.049889538

8.148148

ADCY4, PKLR, ENTPD2, NPR1, ADA2, AK5, PDE2A, PDE6A, ADCY10, PDE4A, PDE10A