Table 3 Characteristics of genome-deduced proteomes (all from NCBI*) from mammals used in this work.

From: Total Ortholog Median Matrix as an alternative unsupervised approach for phylogenomics based on evolutionary distance between protein coding genes

Species	Order levels	Family	Abbreviation	Common name	Genome size (Mb)	Total number of sequences1
Aotus nancymaae	Simiformes, Platyrrhini	Aotidae	AOTNAN	Ma's night monkey	2862	30,849
Callithrix jacchus	Simiformes, Platyrrhini	Cebidae	CALJAC	White-tufted-ear marmoset	2733	31,373
Carlito syrichta	Tarsiiformes	Tarsiidae	CARSYR	Philippine tarsier	3454	26,764
Cebus capucinus	Simiformes, Platyrrhini	Cebidae	CEBCAP	White-faced sapajou	2718	35,515
Cercocebus atys	Simiformes, Catarrhini	Cercopithecidae	CERATY	Sooty mangabey	2848	38,743
Chlorocebus sabaeus	Simiformes, Catarrhini	Cercopithecidae	CHLSAB	Green monkey	2790	38,532
Colobus angolensis	Simiformes, Catarrhini	Cercopithecidae	COLANG	Angolan colobus	2970	28,757
Gorilla gorilla	Simiformes, Catarrhini	Hominidae	GORGOR	Western gorilla	3074	31,611
Homo sapiens	Simiformes, Catarrhini	Hominidae	HOMSAP	Human	3096	54,793
Macaca fascicularis	Simiformes, Catarrhini	Cercopithecidae	MACFAS	Crab-eating macaque	2947	36,852
Macaca mulatta	Simiformes, Catarrhini	Cercopithecidae	MACMUL	Rhesus monkey	3097	34,238
Macaca nemestrina	Simiformes, Catarrhini	Cercopithecidae	MACNEM	Pig-tailed macaque	2949	37,815
Mandrillus leucophaeus	Simiformes, Catarrhini	Cercopithecidae	MANLEU	Drill	3062	28,631
Microcebus murinus	Lemuriformes	Cheirogaleidae	MICMUR	Gray mouse lemur	2487	33,966
Nomascus leucogenys	Simiformes, Catarrhini	Hylobatidae	NOMLEU	White-cheeked gibbon	2962	28,771
Otolemur garnettii	Lorisiformes	Galagidae	OTOGAR	Small-eared galago, or Bushbaby	2520	25,278
Pan paniscus	Simiformes, Catarrhini	Hominidae	PANPAN	Pigmey chimpanzee	3287	31,623
Pan troglodytes	Simiformes, Catarrhini	Hominidae	PANTRO	Chimpamzee	2892	45,468
Papio anubis	Simiformes, Catarrhini	Cercopithecidae	PAPANU	Olive baboon	2959	39,065
Piliocolobus tephrosceles	Simiformes, Catarrhini	Cercopithecidae	PILTEP	Ugandan red Colobus	2923	33,549
Pongo abelli	Simiformes, Catarrhini	Hominidae	PONABE	Sumatran orangutan	3253	32,655
Propithecus coquereli	Lemuriformes	Indiidae	PROCOC	Coquerel's sifaka	2798	23,684
Rhinopithecus bieti	Simiformes, Catarrhini	Cercopithecidae	RHIBLE	Black snub-nosed Monkey	2977	32,121
Rhinopithecus roxellana	Simiformes, Catarrhini	Cercopithecidae	RHIROX	Golden snub-nosed monkey	2900	28,672
Saimiri boliviensis boliviensis	Simiformes, Platyrrhini	Cebidae	SAIBOL	Bolivian squirrel monkey	2609	26,794
Tupaia chinensis (outgroup)	Euarchontoglires, Scadentia	Tupailidae	TUPCHI	Chinese tree shrew	2847	27,162
Mus musculus (outgroup)	Euarchontoglires, Rodentia	Muridae	MUSMUS	Common mouse	2654	76,190

* https://www.ncbi.nlm.nih.gov/genome ; protein sequences were retrieved from RefSeq database.
1. After clusterization at 99% and removal of sequences smaller than 50 aa.

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Table 3 Characteristics of genome-deduced proteomes (all from NCBI*) from mammals used in this work.

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