Table 4 Summary of benchmark datasets.
From: PACIFIC: a lightweight deep-learning classifier of SARS-CoV-2 and co-infecting RNA viruses
Sequence class | Total bases | Fold coverage | Number of reads | Reads with mismatches or indels |
|---|---|---|---|---|
Coronaviridae | 323,274 | 47.5 | 102,076 | 22,295–22,865 |
Human | 75,434,059 | 0.227 | 100,208–100,209 | 21,768–22,425 |
Influenza | 1,684,539 | 9.65 | 100,038–100,290 | 21,825–22,570 |
Metapneumovirus | 66,596 | 228 | 100,548 | 21,890–22,559 |
Rhinovirus | 925,412 | 16.7 | 101,940–101,953 | 22,196–22,919 |
SARS-CoV-2 | 2,599,395 | 5.8 | 100,337–100,349 | 21,831–22,507 |
Unrelated viruses | 1,038,794,620 | 0.01738 | 100,175–100,196 | 21,890–22,479 |
