Table 1 Planktonbaits1 and HABbaits1.

From: Hybridisation capture allows DNA damage analysis of ancient marine eukaryotes

Bait set

Target taxa

Targeted gene/gene region

Database from which sequences were acquired

Planktonbaits1

Ciliophora, MALV, Dinophyceae, Archaeplastida, Euglenida, Telonemia, Haptophyta, Cryptophyta, Katablepharidophyta, Chlorarachnea, Phaeodarea, Foraminifera, Acantharea, Other_Radiolaria, RAD, Collodaria, MAST, Bicoeca, MOCH, Raphidophyceae, Pinguiophyceae, Phaeophyceae, Chrysophyceae-Synurophyceae, Pelagophyceae, Dictyochophyceae, Bolidophyceae-and-relatives, Bacillariophyta

18S-V9

W2_PR2_V925

Trichodesmium erythraeum, Prochlorococcus marinus, Synechococcus sp.

16S-V4

SILVA26

https://www.arb-silva.de/

HABbaits1

Dinoflagellates

 

LSU: SILVA; SSU: PR227 or NCBI (https://www.ncbi.nlm.nih.gov/); D1D2: PHYTOPK28S-D1D228; ITS: BOLD29 (http://www.boldsystems.org/) or NCBI; rbcL: BOLD; COI: BOLD or NCBI

Alexandrium tamarense Group 1 (A. catenella)

LSU, D1D2, ITS, COI

Alexandrium tamarense Group 2 (A. mediterraneum)

LSU, D1D2, ITS, COI

Alexandrium tamarense Group 3 (A. tamarense)

LSU, D1D2, ITS, COI

Alexandrium tamarense Group 4 (A. pacificum)

LSU, D1D2, ITS, COI

Alexandrium tamarense Group 5 (A. australiense)

LSU, D1D2, ITS, COI

Gymnodinium catenatum

LSU, D1D2, ITS, COI

Noctiluca scintillans

LSU, D1D2

Tripos (Ceratium) furca

LSU, SSU, D1D2

Tripos (Ceratium) fusus

LSU, SSU, D1D2, COI

Tripos sp. (genus)

SSU

Tripos muelleri

LSU, SSU

Diatoms

 

Pseudo-nitzschia sp. (genus)

LSU, D1D2, SSU, ITS

Pseudo-nitzschia cuspidata

LSU, D1D2, ITS, rbcL

Pseudo-nitzschia pungens

LSU, D1D2, ITS, rbcL

Haptophytes

 

Emiliania huxleyi

LSU, D1D2, rbcL, COI

Cnidarians

 

Aurelia spp.

LSU, D1D2, ITS, COI

Cyanea spp.

LSU, ITS, COI

Physalia

LSU, ITS, COI

Molluscs

 

Crassostrea gigas

LSU, D1D2, ITS, COI

Ostrea angasi

LSU, COI

Mytilus galloprovincialis

LSU, D1D2, ITS, COI

Modiolus spp.

LSU, D1D2, ITS, COI

Genes involved in toxin production

SxtA

  1. Target taxa of Plankton- and HABbaits1 genes/gene regions and source databases. For HABbaits1, all listed databases were searched for each gene (region) per target taxon, and, if available, the longest sequence was selected and included.