Table 1 Planktonbaits1 and HABbaits1.
From: Hybridisation capture allows DNA damage analysis of ancient marine eukaryotes
Bait set | Target taxa | Targeted gene/gene region | Database from which sequences were acquired |
|---|---|---|---|
Planktonbaits1 | Ciliophora, MALV, Dinophyceae, Archaeplastida, Euglenida, Telonemia, Haptophyta, Cryptophyta, Katablepharidophyta, Chlorarachnea, Phaeodarea, Foraminifera, Acantharea, Other_Radiolaria, RAD, Collodaria, MAST, Bicoeca, MOCH, Raphidophyceae, Pinguiophyceae, Phaeophyceae, Chrysophyceae-Synurophyceae, Pelagophyceae, Dictyochophyceae, Bolidophyceae-and-relatives, Bacillariophyta | 18S-V9 | W2_PR2_V925 |
Trichodesmium erythraeum, Prochlorococcus marinus, Synechococcus sp. | 16S-V4 | SILVA26 | |
HABbaits1 | Dinoflagellates | LSU: SILVA; SSU: PR227 or NCBI (https://www.ncbi.nlm.nih.gov/); D1D2: PHYTOPK28S-D1D228; ITS: BOLD29 (http://www.boldsystems.org/) or NCBI; rbcL: BOLD; COI: BOLD or NCBI | |
Alexandrium tamarense Group 1 (A. catenella) | LSU, D1D2, ITS, COI | ||
Alexandrium tamarense Group 2 (A. mediterraneum) | LSU, D1D2, ITS, COI | ||
Alexandrium tamarense Group 3 (A. tamarense) | LSU, D1D2, ITS, COI | ||
Alexandrium tamarense Group 4 (A. pacificum) | LSU, D1D2, ITS, COI | ||
Alexandrium tamarense Group 5 (A. australiense) | LSU, D1D2, ITS, COI | ||
Gymnodinium catenatum | LSU, D1D2, ITS, COI | ||
Noctiluca scintillans | LSU, D1D2 | ||
Tripos (Ceratium) furca | LSU, SSU, D1D2 | ||
Tripos (Ceratium) fusus | LSU, SSU, D1D2, COI | ||
Tripos sp. (genus) | SSU | ||
Tripos muelleri | LSU, SSU | ||
Diatoms | |||
Pseudo-nitzschia sp. (genus) | LSU, D1D2, SSU, ITS | ||
Pseudo-nitzschia cuspidata | LSU, D1D2, ITS, rbcL | ||
Pseudo-nitzschia pungens | LSU, D1D2, ITS, rbcL | ||
Haptophytes | |||
Emiliania huxleyi | LSU, D1D2, rbcL, COI | ||
Cnidarians | |||
Aurelia spp. | LSU, D1D2, ITS, COI | ||
Cyanea spp. | LSU, ITS, COI | ||
Physalia | LSU, ITS, COI | ||
Molluscs | |||
Crassostrea gigas | LSU, D1D2, ITS, COI | ||
Ostrea angasi | LSU, COI | ||
Mytilus galloprovincialis | LSU, D1D2, ITS, COI | ||
Modiolus spp. | LSU, D1D2, ITS, COI | ||
Genes involved in toxin production | |||
SxtA | |||