Table 2 Summary of near full-length genomes from 12 HIV-1 samples with next-generation sequencing (NGS) and Sanger sequencing.
ID | Sequencing method | Summary of sequencing results | Sequence position | Analyses | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
Total no. of paired-end reads | Assembled genome size (bp) | Mean coverage depth (x) | HXB2 coverage (%) | Begin | End | jpHMM | REGA | RDP4 | ||
KR001 | NGS | 5777 | 8756 | 2328.89 | 98.6 | 790 | 9411 | B | B | – |
KR002 | 6003 | 8728 | 1349.06 | 90.0 | 790 | 9411 | B | B | – | |
KR004 | 15,288 | 8768 | 2632.06 | 70.3 | 790 | 9411 | B | B | – | |
KR005 | 11,920 | 8628 | 1699.36 | 95.7 | 841 | 9411 | A1, G | CRF43_02G, A1, G | CRF02_G, CRF43_02G | |
KR006 | 13,515 | 8785 | 5196.68 | 89.0 | 790 | 9411 | B | B | – | |
KR012 | 10,069 | 8801 | 2305.98 | 90.3 | 790 | 9407 | B | B | – | |
KR014 | 5200 | 8788 | 1531.72 | 33.9 | 790 | 9408 | B | B | – | |
KR016 | 5457 | 8778 | 1632.23 | 90.0 | 790 | 9411 | B | B | – | |
KR017 | 3721 | 8754 | 499.44 | 64.0 | 790 | 9411 | B | B | – | |
KR020 | 8930 | 8768 | 2328.67 | 80.5 | 790 | 9411 | B | B | – | |
KR021 | Sanger | – | 9237 | – | 95.0 | 658 | 9511 | B | B | – |
KR050 | – | 9237 | – | 95.0 | 538 | 9511 | CRF07_BC | CRF07_BC | CRF07_BC | |
