Table 2 Housekeeping genes included in phylogenetic study of Yersinia ruckeri.

From: Diversification of OmpA and OmpF of Yersinia ruckeri is independent of the underlying species phylogeny and evidence of virulence-related selection

Gene

Name

Position in reference genome (ATCC 29473)

Direction

Length (nt)

Start

Stop

aarF

Ubiquinone biosynthesis

1,853,520

1,855,154

Complement

1634

adk

Adenylate kinase

3,172,292

3,172,936

Forward

644

aroA

3-Phosphosphikimate 1-carboxyvinyltransferase

3,571,559

3,572,845

Forward

1286

deoD

Purine nucleoside phosphorylase

2,713,635

2,714,360

Forward

725

dfp

Phosphpantothenate-cysteine ligase

2,094,362

2,095,576

Forward

1214

dnaJ

Chaperone protein

2,747,109

2,748,242

Forward

1133

g6pd

Glucose-6-phosphate 1-dehydrogenase

212,504

213,979

Forward

1475

gdhA

Quinoprotein glucose dehyrdogenase A

2,313,006

2,314,349

Complement

1343

glnA

Glutamine synthetase

2,025,330

2,026,739

Forward

1409

dlnS

Glutamine-tRNA ligase

3,298,889

3,300,556

Forward

1667

groEL

60 kDa chaperonin

2,476,907

2,478,550

Forward

1643

gyrB

DNA gyrase subunit B

2,204,186

2,206,600

Forward

2414

hemA

Glutamyl-tRNA reductase

160,404

161,666

Forward

1262

mdh

Malate dehydrogenase

2,549,973

2,550,908

Forward

935

pgi

Glucose-6-phosphate 1-isomerase

1,736,929

1,738,575

Complement

1646

recA

Recombinase A

2,990,962

2,992,032

Forward

1070

rfaE

Bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase

1,512,212

1,513,642

Complement

1430

speA

Biosynthetic arginine decarboxylase

1,410,853

1,412,832

Complement

1979

thrA

Bifunctional aspartokinase/homoserine dehydrogenase 1

2,732,281

2,734,740

Forward

2459

    

Total:

27,368