Table 2 Housekeeping genes included in phylogenetic study of Yersinia ruckeri.
Gene | Name | Position in reference genome (ATCC 29473) | Direction | Length (nt) | |
|---|---|---|---|---|---|
Start | Stop | ||||
aarF | Ubiquinone biosynthesis | 1,853,520 | 1,855,154 | Complement | 1634 |
adk | Adenylate kinase | 3,172,292 | 3,172,936 | Forward | 644 |
aroA | 3-Phosphosphikimate 1-carboxyvinyltransferase | 3,571,559 | 3,572,845 | Forward | 1286 |
deoD | Purine nucleoside phosphorylase | 2,713,635 | 2,714,360 | Forward | 725 |
dfp | Phosphpantothenate-cysteine ligase | 2,094,362 | 2,095,576 | Forward | 1214 |
dnaJ | Chaperone protein | 2,747,109 | 2,748,242 | Forward | 1133 |
g6pd | Glucose-6-phosphate 1-dehydrogenase | 212,504 | 213,979 | Forward | 1475 |
gdhA | Quinoprotein glucose dehyrdogenase A | 2,313,006 | 2,314,349 | Complement | 1343 |
glnA | Glutamine synthetase | 2,025,330 | 2,026,739 | Forward | 1409 |
dlnS | Glutamine-tRNA ligase | 3,298,889 | 3,300,556 | Forward | 1667 |
groEL | 60Â kDa chaperonin | 2,476,907 | 2,478,550 | Forward | 1643 |
gyrB | DNA gyrase subunit B | 2,204,186 | 2,206,600 | Forward | 2414 |
hemA | Glutamyl-tRNA reductase | 160,404 | 161,666 | Forward | 1262 |
mdh | Malate dehydrogenase | 2,549,973 | 2,550,908 | Forward | 935 |
pgi | Glucose-6-phosphate 1-isomerase | 1,736,929 | 1,738,575 | Complement | 1646 |
recA | Recombinase A | 2,990,962 | 2,992,032 | Forward | 1070 |
rfaE | Bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase | 1,512,212 | 1,513,642 | Complement | 1430 |
speA | Biosynthetic arginine decarboxylase | 1,410,853 | 1,412,832 | Complement | 1979 |
thrA | Bifunctional aspartokinase/homoserine dehydrogenase 1 | 2,732,281 | 2,734,740 | Forward | 2459 |
| Â | Â | Â | Â | Total: | 27,368 |